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    Species Richness and Diversity
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    Keywords:
    Rank abundance curve
    Gamma diversity
    Global biodiversity
    Abstract Understanding the drivers of community stability in times of increasing anthropogenic pressure is an urgent issue. Biodiversity is known to promote community stability, but studies of the biodiversity–stability relationship rarely consider the full complexity of biodiversity change. Furthermore, finding generalities that hold across taxonomic groups and spatial and temporal scales remains challenging because most investigations have narrow taxonomic, spatial, and temporal scopes. We used organismal data collected through the National Ecological Observatory Network (NEON) at sites across the contiguous United States to evaluate linkages between community stability and biodiversity change for four taxonomic groups: small mammals, ground beetles, fish, and freshwater macroinvertebrates. We defined community stability as constancy of aggregate species' abundance. We quantified change in biodiversity as (1) dissimilarity in community taxonomic and functional composition and species replacement and richness change components of that dissimilarity and (2) change in species' abundance distributions as captured by change in species rank, richness, and evenness. We found that community stability increased with species replacement and with contribution of species replacement to overall dissimilarity for all taxonomic groups, but declined with increasing change in species richness and evenness. This is consistent with the notion that temporal fluctuations in species abundance can help stabilize community properties. We also found that community stability was highest when change in community functional composition was either lower or higher than expected given reshuffling of each community's taxonomic composition. This suggests that long‐term community stability can result from fluctuations of functionally similar species in assemblages with high taxonomic reshuffling. On the contrary, the functional uniqueness of fluctuating species compensates for lower taxonomic reshuffling to drive stabilization of community properties. Our study provides an initial assessment of the relationship between community stability and biodiversity change and illustrates the utility of fine temporal resolution data collected across ecosystems and biomes to understand the general mechanisms underlying biodiversity–stability relationships.
    Gamma diversity
    Rank abundance curve
    Taxonomic rank
    Global biodiversity
    Community
    Relative abundance distribution
    Citations (10)
    Understanding patterns of biodiversity in deep sea systems is increasingly important because human activities are extending further into these areas. However, obtaining data is difficult, limiting the ability of science to inform management decisions. We have used three different methods of quantifying biodiversity to describe patterns of biodiversity in an area that includes two marine reserves in deep water off southern Australia. We used biological data collected during a recent survey, combined with extensive physical data to model, predict and map three different attributes of biodiversity: distributions of common species, beta diversity and rank abundance distributions (RAD). The distribution of each of eight common species was unique, although all the species respond to a depth-correlated physical gradient. Changes in composition (beta diversity) were large, even between sites with very similar environmental conditions. Composition at any one site was highly uncertain, and the suite of species changed dramatically both across and down slope. In contrast, the distributions of the RAD components of biodiversity (community abundance, richness, and evenness) were relatively smooth across the study area, suggesting that assemblage structure (i.e. the distribution of abundances of species) is limited, irrespective of species composition. Seamounts had similar biodiversity based on metrics of species presence, beta diversity, total abundance, richness and evenness to the adjacent continental slope in the same depth ranges. These analyses suggest that conservation objectives need to clearly identify which aspects of biodiversity are valued, and employ an appropriate suite of methods to address these aspects, to ensure that conservation goals are met.
    Rank abundance curve
    Relative abundance distribution
    Gamma diversity
    Global biodiversity
    Conservation Biology
    Measurement of biodiversity
    Abstract Biodiversity metrics often integrate data on the presence and abundance of multiple species. Yet understanding covariation of changes to the numbers of individuals, the evenness of species’ relative abundances, and the total number of species remains limited. Using individual-based rarefaction curves, we introduce a conceptual framework to understand how expected positive relationships among changes in abundance, evenness and richness arise, and how they can break down. We then examined interdependencies between changes in abundance, evenness and richness in more than 1100 assemblages sampled either through time or across space. As predicted, richness changes were greatest when abundance and evenness changed in the same direction, and countervailing changes in abundance and evenness acted to constrain the magnitude of changes in species richness. Site-to-site changes in abundance, evenness, and richness were often decoupled, and pairwise relationships between changes in these components across assemblages were weak. In contrast, changes in species richness and relative abundance were strongly correlated for assemblages varying through time. Temporal changes in local biodiversity showed greater inertia and stronger relationships between the component changes when compared to site-to-site variation. Local variation in assemblage diversity was rarely due to a passive sample from a more or less static species abundance distribution. Instead, changing species relative abundances often dominated local variation in diversity. Moreover, how changing relative abundances combined with changes to total abundance frequently determined the magnitude of richness changes. Embracing the interdependencies between changing abundance, evenness and richness can provide new information for better understanding biodiversity change in the Anthropocene.
    Rank abundance curve
    Relative abundance distribution
    Rarefaction (ecology)
    Citations (7)
    Abstract Species diversity is the number of species present in an area or sample, together with the characteristics of their relative abundance distribution, especially its evenness. Species diversity is only one dimension of biodiversity, but because species are fundamental units of ecology and evolution, and because most diversity data consist of species presence/absence, species diversity is often central to assessing and conserving biodiversity. After noting major conceptual and practical issues with species diversity and species richness, we discuss how best to estimate them from samples both for estimating total species number and for comparing diversity across samples and areas. Despite errors associated with extrapolation, recent research has demonstrated that in many cases, given adequate sampling, both nonparametric and parametric methods can estimate total species richness and effectively standardize across samples. Much research has focused on developing and interpreting compound diversity measures that incorporate patterns of both richness and abundance, some with weightings for additional factors such as rarity, phylogenetic distinctness, and ecological function. For a well‐known set of these indices, including the Shannon and Simpson indices, lognormal mean and variance, log‐series α and related neutral theory parameters, we discuss their consistency in ordering samples and their sensitivity and dependence on sample size. Finally, we touch upon major global patterns of diversity including estimates of the number of species on earth (5 million to 50 million) and large‐scale diversity gradients.
    Gamma diversity
    Relative abundance distribution
    Rank abundance curve
    Global biodiversity
    Rarefaction (ecology)
    Diversity index
    Phylogenetic diversity
    In the previous chapter we covered ways of describing samples of benthos, but specifically did not include diversity. We can talk of primary community variables, such as abundance (A), species richness (S) and biomass (B), and derived variables from these such as true diversity indices, evenness indices, and ratios indicating the relationship between species richness and abundance (A/S, the abundance ratio or the average abundance per species) and between biomass and abundance (B/A, the biomass ratio or the mean biomass per individual). Diversity is not just simply about the number of species found in a sample or area, but also uses data on the abundances of individuals among the species and the way those abundances are distributed among the species within the assemblage. There are many ways of describing diversity. Here we give a summary of the most important ones and reference sources of recent literature on the subject (see also the data analysis summary in Chapter 11). In the following section we consider simple indices (univariate) as measures of diversity; multivariate methods of analysing patterns will be covered in Chapter 7 on the effects of disturbance. The simplest way to measure diversity is the number of species found in a sample, called the species richness (S or SR). Yet diversity is not just about numbers of species; it is also concerned with the distribution of numbers of individuals per species. For example, if one assemblage has 50 individuals of each of 2 species A and B whereas another assemblage has 99 individuals of species A and 1 individual of species B, then both have the same species richness but the first assemblage is the more diverse. Thus a measure of diversity (an index) must take into account not only the number of species, but also the number of individuals per species. To distinguish this from species richness, the combination of individuals per species and number of species is called heterogeneity diversity. In fact there are a large number of diversity indices, and we do not propose to consider them all here (Magurran 2004 gives an excellent and detailed account and others are mentioned in the summary in Chapter 11).
    Relative abundance distribution
    Rank abundance curve
    Diversity index
    Gamma diversity
    Assemblage (archaeology)
    Global biodiversity
    Macroecology
    Biodiversity metrics often integrate data on the presence and abundance of multiple species. Yet our understanding of covariation between changes to the numbers of individuals, the evenness of species relative abundances, and the total number of species remains limited. Using individual-based rarefaction curves, we show how expected positive relationships among changes in abundance, evenness and richness arise, and how they can break down. We then examined interdependencies between changes in abundance, evenness and richness in more than 1100 assemblages sampled either through time or across space. As predicted, richness changes were greatest when abundance and evenness changed in the same direction, and countervailing changes in abundance and evenness acted to constrain the magnitude of changes in species richness. Site-to-site differences in abundance, evenness, and richness were often decoupled, and pairwise relationships between these components across assemblages were weak. In contrast, changes in species richness and relative abundance were strongly correlated for assemblages varying through time. Temporal changes in local biodiversity showed greater inertia and stronger relationships between the component changes when compared to site-to-site variation. Overall, local variation in assemblage diversity was rarely due to repeated passive samples from an approximately static species abundance distribution. Instead, changing species relative abundances often dominated local variation in diversity. Moreover, how changing relative abundances combined with changes to total abundance frequently determined the magnitude of richness changes. Embracing the interdependencies between changing abundance, evenness and richness can provide new information to better understand biodiversity change in the Anthropocene.
    Rank abundance curve
    Relative abundance distribution
    Rarefaction (ecology)
    Gamma diversity
    Citations (47)
    ABSTRACT Anthropogenic activities have accelerated the rate of global loss of biodiversity, making it more important than ever to understand the structure of biodiversity hotspots. One current focus is the relationship between species richness and aboveground biomass (AGB) in a variety of ecosystems. Nonetheless, species diversity, evenness, rarity, or dominance represent other critical attributes of biodiversity and may have associations with AGB that are markedly different than that of species richness. Using data from large trees in four environmentally similar sites in the Luquillo Experimental Forest of Puerto Rico, we determined the shape and strength of relationships between each of five measures of biodiversity ( i.e ., species richness, Simpson's diversity, Simpson's evenness, rarity, and dominance) and AGB. We quantified these measures of biodiversity using either proportional biomass or proportional abundance as weighting factors. Three of the four sites had a unimodal relationship between species richness and AGB, with only the most mature site evincing a positive, linear relationship. The differences between the mature site and the other sites, as well as the differences between our richness–AGB relationships and those found at other forest sites, highlight the crucial role that prior land use and severe storms have on this forest community. Although the shape and strength of relationships differed greatly among measures of biodiversity and among sites, the strongest relationships within each site were always those involving richness or evenness.
    Dominance (genetics)
    Rank abundance curve
    Global biodiversity
    Gamma diversity