Chronic wasting disease (CWD) prion strains evolve via adaptive diversification of conformers in hosts expressing prion protein polymorphisms.

Chronic wasting disease (CWD) is caused by an unknown spectrum of prions and has become enzootic in populations of cervid species that express PrP(C) molecules varying in amino acid composition. These PrP(C) polymorphisms can affect prion transmission, disease progression, neuropathology, and emergence of new prion strains, but the mechanistic steps in prion evolution are not understood. Here, using conformation-dependent immunoassay (CDI), conformation stability assay (CSA) and protein misfolding cyclic amplification (PMCA), we monitored the conformational and phenotypic characteristics of CWD prions passaged through deer and transgenic mice expressing different cervid PrP(C) polymorphisms. We observed that transmission through hosts with distinct PrP(C) sequences diversifies the PrP(CWD) conformations and causes a shift towards oligomers with defined structural organization, replication rate, and host range. When passaged in host environments that restrict prion replication, distinct co-existing PrP(CWD) conformers underwent competitive selection, stabilizing a new prion strain. Non-adaptive conformers exhibited unstable replication and accumulated only to low levels. These results suggest a continuously evolving diversity of CWD conformers and imply a critical interplay between CWD prion plasticity and PrP(C) polymorphisms during prion strain evolution.