Abstract: The ultrastructure of cell walls and the mechanisms of cell wall formation are still not fully understood. The objective of our study was therefore to obtain additional fine structural details on the deposition of cell wall components during the differentiation of xylem cells in hybrid aspen ( Populus tremula L. × P. tremuloides Michx.) we used as a model tree. At the electron microscope level, PATAg staining revealed a successive deposition of polysaccharides with increasing distance from the cambium. Staining with potassium permanganate and UV microspectrophotometry showed that the cell walls were lignified, with some delay to the deposition of polysaccharides. Immunogold labelling of three lignin types in developing cell walls varied with progressive deposition of cell wall layers. Condensed lignin subunits were localized in corners of cells adjacent to the cambium prior to S1 formation, whereas non‐condensed lignin subunits became labelled only in later stages ‐ in secondary walls near cell corners and simultaneously with the completion of S1 formation. As S2 polysaccharide deposition progressed, the labelling extended towards the lumen. Labelling of peroxidases revealed their presence in cell corner regions of young xylem cells, still lacking a secondary wall, implying that peroxidases are incorporated into the developing cell wall at early developmental stages. A weak labelling of middle lamella regions and secondary walls could also be seen at later stages. The results are discussed in relation to current knowledge on the succession of polysaccharide and lignin deposition in woody cell walls.
Abstract Summary: The Python-based, open-source eMZed framework was developed for mass spectrometry (MS) users to create tailored workflows for liquid chromatography (LC)/MS data analysis. The goal was to establish a unique framework with comprehensive basic functionalities that are easy to apply and allow for the extension and modification of the framework in a straightforward manner. eMZed supports the iterative development and prototyping of individual evaluation strategies by providing a computing environment and tools for inspecting and modifying underlying LC/MS data. The framework specifically addresses non-expert programmers, as it requires only basic knowledge of Python and relies largely on existing successful open-source software, e.g. OpenMS. Availability: The framework eMZed and its documentation are freely available at http://emzed.biol.ethz.ch/. eMZed is published under the GPL 3.0 license, and an online discussion group is available at https://groups.google.com/group/emzed-users. Contact: kiefer@micro.biol.ethz.ch Supplementary information: Supplementary data are available at Bioinformatics online.
Evaluating the state of deterioration of water-logged archaeological wood is necessary in order to select treatments for its conservation and storage, particularly in the case of valuable archaeological artefacts. For this purpose archaeological wood of ash ( Fraxinus sp.) and oak ( Quercus sp.) buried in water-logged conditions at prehistoric settlements on the Ljubljansko barje (Ljubljana moor), Slovenia, aged approx. 5,200 and 4,500 years, was investigated by means of light microscopy (LM), transmission electron microscopy (TEM) and cellular UV-microspectrophotometry (UMSP). LM and TEM revealed that the ash wood aged 5,200 years was the least preserved. The secondary walls of fibres, vessels and parenchyma cells were considerably thinner than in normal wood, indicating distinct degradation. TEM and UMSP additionally revealed strong delignification of the remaining parts of the secondary walls of all cell types. The compound middle lamellae appeared structurally intact, but had lower UV-absorbance than normal wood of the same species. The cell corners were topochemically unchanged, as shown by high analogue UV-absorbance. The UV-absorbance maxima at a wavelength of 278 nm corresponded to those of hardwood lignins. The oak heartwood was generally better preserved than the ash wood. Within each species, the 4,500- year-old samples generally appeared better preserved than those 5,200 years old.
'%3e%3ccircle r='20' fill='%23008'/%3e%3ccircle r='17.5' fill='%23fff'/%3e%3ccircle r='3.5' fill='%23008'/%3e%3cg id='d'%3e%3cg id='c'%3e%3cg id='b'%3e%3cg id='a' fill='%23008'%3e%3ccircle r='.875' transform='rotate(7.5 -8.75 133.5)'/%3e%3cpath d='M0 17.5.6 7 0 2l-.6 5L0 17.5z'/%3e%3c/g%3e%3cuse xlink:href='%23a' transform='rotate(15)'/%3e%3c/g%3e%3cuse xlink:href='%23b' transform='rotate(30)'/%3e%3c/g%3e%3cuse xlink:href='%23c' transform='rotate(60)'/%3e%3c/g%3e%3cuse xlink:href='%23d' transform='rotate(120)'/%3e%3cuse xlink:href='%23d' transform='rotate(-120)'/%3e%3c/g%3e%3c/svg%3e)
