Evaluation of human and animal health surveillance programs is currently lacking in most developing countries including sub-Saharan Africa. To evaluate the burden of salmonellosis and antimicrobial resistance status in developing countries, we need to identify the sources, serovar distribution and the prevalence of Salmonella to guide in the formulation of control program. This study was undertaken to determine the prevailing Salmonella serovars, the occurrence and the antimicrobial susceptibility patterns of Salmonella enterica subspecies enterica recovered from fish. Stratified random sampling was carried out in 2009 on 200 fish samples. All the isolates were biochemically characterized and presumptive Salmonella isolates were serotyped using standard procedure and tested for antimicrobial susceptibility by minimum inhibitory concentration (MIC). A total of 23 isolates were positive for Salmonella out of the 200 samples (11.5%) analyzed, three different serovars comprising Salmonella serovars Hadar, 47: mt:-, and Eko were obtained. Generally, the antimicrobial resistance profile was low; however Salmonella Hadar showed a high level of resistance to the antimicrobial agents. Salmonella serovars; Hadar, 47: mt:- and Eko are the pathogens associated with fish contamination in Maiduguri, North eastern Nigeria and constitute serious health risks for the human population and need to be controlled by targeted interventions.
The paucity of information on the genomic diversity of drug-resistant bacteria in most food-producing animals, including poultry in Nigeria, has led to poor hazard characterization and the lack of critical control points to safeguard public health. Hence, this study used whole genome sequencing (WGS) to assess the presence and the diversity of antibiotic resistance genes, mobile genetic elements, virulence genes, and phages in Extended Spectrum Beta Lactamase producing Escherichia coli (ESBL - E. coli) isolates obtained from poultry via the EURL guideline of 2017 in Ilorin, Nigeria. The prevalence of ESBL - E. coli in poultry was 10.5 % (n = 37/354). The phenotypic antibiotic susceptibility testing showed that all the ESBL- E. coli isolates were multi-drug resistant (MDR). The in-silico analysis of the WGS raw-read data from 11 purposively selected isolates showed that the isolates had a wide array of ARGs that conferred resistance to beta-lactam antibiotics, and 8 other classes of antibiotics (fluoroquinolones, foliate pathway antagonists, aminoglycoside, phenicol, tetracycline, epoxide, macrolides, and rifamycin). All the ARGs were in the bacterial chromosome except in two isolates where plasmid-mediated quinolone resistance (PMQR) was detected. Two isolates carried the gyrAp.S83L mutation which confers resistance to certain fluoroquinolones. The mobilome consisted of several Col-plasmids and the predominant IncF plasmids belonged to the IncF64:A-:B27 sequence type. The virulome consisted of genes that function as adhesins, iron acquisition genes, toxins, and protectins. Intact phages were found in 8 of the 11 isolates and the phageome consisted of representatives of four families of viruses: Myoviridae (62.5 %, n = 5/8), Siphoviridae (37.5 %, n = 3/8), Inoviridae (12.5 %, n = 1), and Podoviridae (12.5 %, n = 1/8). ESBL - E. coli isolates harboured 1-5 intact phages and no ARGs were identified on any of the phages. Although five of the isolates belonged to phylogroup A, the isolates were diverse as they belonged to different serotype and sequence types. Our findings demonstrate the high genomic diversity of ESBL - E. coli of poultry origin in Ilorin, Nigeria. These diverse isolates harbor clinically relevant ARGs, mobile elements, virulence genes, and phages that may have detrimental zoonotic potentials on human health.
Dermatophilosis caused by D. congolensis is a bacterial infection of the epidermis characterized by thick scab formation on the integumentary of infected animals. Oftentimes, it is highly tasking to establish a confirmatory diagnosis of D. congolensis infection because of its close resemblance to other members of the family Actinomycetaceae some of which cause similar disease manifestations. The difficulty in establishing an accurate diagnosis may negatively impact treatment outcomes and thus the search for a more precise diagnostic approach becomes of great importance to limit the waiting time for therapeutic options. In this study, 164 scabs collected from clinically infected cattle in Abeokuta and Ilorin, Nigeria were examined using the direct microscopy, isolation and the polymerase chain reaction techniques. The scabs were examined microscopically after staining with Giemsa and also cultured using 5% sheep blood agar supplemented with 1000 units/ml of polymixin B sulphate. Antimicrobial susceptibility testing of the isolates was carried out using Mueller–Hinton agar supplemented with 5% sheep blood. Extracted DNA from isolates of the organism was used for the detection of a 16S rRNA gene using the polymerase chain reaction (PCR) technique. Out of the 164 samples examined in this study, 128 (78%) were positive by direct microscopy (DM) using Giemsa staining technique, while 54 (32.9%) were positive by isolation technique and 51 (31.1%) were confirmed with the PCR technique after bacterial isolation. Based on results from this study, we concluded that isolation technique is not only a recommendable option for the diagnosis of dermatophilosis but also offers an opportunity for antimicrobial susceptibility testing.
Salmonellosis is an important global foodborne disease caused by Salmonella enterica (S. enterica). Strains that are resistant to a variety of antibiotics were known to constitute major hazard to public health. The objectives of this study are to determine the serovar distributions, genomic antimicrobial resistance, prediction of genes conferring resistance to selected antibiotics, the multi-locus sequence typing (MLST), and plasmid replicon typing of “unassigned” S. enterica isolated from poultry. A total of 300 samples comprised of: post-mortem tissues (n = 150), cloacal swabs (n = 30), and poultry environment (n = 120) were aseptically collected and analyzed between January and June, 2017. Presumptive S. enterica isolates were characterized using conventional cultural methods, biochemical tests, and serotyping. The isolates were characterized, using Whole Genome Sequencing (WGS) Method. Five “unassigned” S. enterica serovars were recovered from four matrices (liver, n = 1; water, n = 1; cloacal swab, n = 2; poultry feed, n = 1). Prediction of point mutation in parC (T57S) was reported in two strains which confer resistance to nalidixic acid; in addition to this, prediction of fosA7 that confers resistance to fosfomycin was identified in one of these strains. Three isolates each encoded plasmid mediated quinolone resistance (PMQR) qnrB69 and bla-CMY-98 genes expected to confer decreased susceptibility to ciprofloxacin and resistance to ampicillin, amoxicillin-clavulanic acid, cefoxitin, and ceftriaxone, respectively. Three sequence types, ST-6111, 6114 and 7073 were detected. None of the isolates harbored plasmid replicon. This study highlights the importance of “unassigned” S. enterica serovars in the emergence and spread of S. enterica in poultry. There is a need for the establishment of national collaborative Salmonella program to further investigate the pathogenic and public health risk to humans, of “unassigned” S. enterica serovars in Nigeria.
Milk handling practices in the Nigerian informal sector are usually poorly done. This is a threat to food safety and public health. We investigated the common practices by handlers involved in the milk processing and the contamination levels of raw cow milk marketed for consumption in Kwara State, Nigeria. In a cross-sectional survey, a pre-tested questionnaire (n = 500) was administered to consenting vendors to assess practices employed in milk processing. Raw cattle milk (n = 1225) sold in markets of Kwara State were assessed for contamination using the Total aerobic count (TAC) and Total coliform count (TCC) methods. Data were analysed by descriptive and inferential statistics. The majority of respondents were married (84%), females (65.2%), and had no formal education (43.2%). Some unwholesome practices among vendors such as pooling unsold milk (40.6%), adding unsterilized water to milk (22.2%), and sourcing water from streams (53.2%) were reported. Females (OR = 0.09; 95% CI: 0.040, 0.170; p < 0.001) and those with tertiary educational level (OR=0.01, 95% CI: 0.002, 0.041; p < 0.001) were less likely to be associated with unsatisfactory hygienic practices. All TAC and TCC were higher than 5logcfu/ml and higher counts were observed in the dry season. Because of public safety, a high-level hygienic and good milk handling practices – while enlightenment of vendors on standard hygiene, are required.
Intussusception is the invagination of one segment of the intestine into the part of the tract that either precedes or follows in the gastrointestinal tract of different species of animals. This report describes a case of fatal multiple intestinal intussusceptions and torsion associated with non-degradable foreign body gastrointestinal obstruction in a captive lion (Panthera leo) in a zoo in Nigeria. Parenchymatous tissues were aseptically collected during necropsy for bacteriological isolation and histopathology. Also, intestinal fecal material was collected and sent for parasitological examination. The main lesions were gastroduodenal, duodeduodenal, duodejejunal and jejunojenunal intussusceptions and duodenal torsion. A non-degradable towel-like fabric foreign body obstruction along the pyloric antrum/canal region of the stomach down to the jejunum was found. Microscopic lesion included ischemic necrosis of inner circular and outer longitudinal smooth muscles of the intestine with necrosis of other layers and vascular congestion. Parasitological examination revealed presence of Babesia spp. in blood smear examined before the death of the lion. While Escherichia coli was isolated from the liver on MacConkey agar. A diagnosis of intussusception and torsion associated with non-degradable foreign body (fabric) gastrointestinal obstruction was made. This first case of ingestion of a non-degradable fabric foreign body leading to gastrointestinal obstruction in captive lion in Nigeria has brought about the need for vigilance of zoo authority to prevent a recurrence during crowd influx to the garden.
Journal Article The first attempt of an active integrated laboratory‐based Salmonella surveillance programme in the north‐eastern region of Nigeria Get access I. Raufu, I. Raufu Department of Veterinary Microbiology Faculty of Veterinary Medicine University of Ilorin Ilorin Nigeria Correspondence Ibrahim Raufu, Department of Veterinary Microbiology, Faculty of Veterinary Medicine, University of Ilorin, Ilorin P.M.B. 1515, Nigeria. E‐mail: raufuib@yahoo.com Search for other works by this author on: Oxford Academic Google Scholar V. Bortolaia, V. Bortolaia WHO Collaborating Center for Antimicrobial Resistance in Food borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance National Food Institute Technical University of Denmark Kgs. Lyngby Denmark Search for other works by this author on: Oxford Academic Google Scholar C.A. Svendsen, C.A. Svendsen WHO Collaborating Center for Antimicrobial Resistance in Food borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance National Food Institute Technical University of Denmark Kgs. Lyngby Denmark Search for other works by this author on: Oxford Academic Google Scholar J.A. Ameh, J.A. Ameh Department of Veterinary Microbiology Faculty of Veterinary Medicine University of Maiduguri Maiduguri Nigeria Search for other works by this author on: Oxford Academic Google Scholar A.G. Ambali, A.G. Ambali Department of Veterinary Microbiology Faculty of Veterinary Medicine University of Ilorin Ilorin Nigeria Search for other works by this author on: Oxford Academic Google Scholar F.M. Aarestrup, F.M. Aarestrup WHO Collaborating Center for Antimicrobial Resistance in Food borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance National Food Institute Technical University of Denmark Kgs. Lyngby Denmark Search for other works by this author on: Oxford Academic Google Scholar R.S. Hendriksen R.S. Hendriksen WHO Collaborating Center for Antimicrobial Resistance in Food borne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance National Food Institute Technical University of Denmark Kgs. Lyngby Denmark Search for other works by this author on: Oxford Academic Google Scholar Journal of Applied Microbiology, Volume 115, Issue 4, 1 October 2013, Pages 1059–1067, https://doi.org/10.1111/jam.12304 Published: 01 October 2013 Article history Received: 25 March 2013 Revision received: 12 June 2013 Accepted: 28 June 2013 Published: 01 October 2013
Salmonellosis is a major threat facing the poultry industry globally. This study was conducted to investigate the level of Salmonella contaminations and determine the resistance pattern of isolates obtained from selected poultry farms in Kwara State, a transition state between southern and northern regions of Nigeria. A total of 900 samples were collected between January and August 2017, from the poultry environment, apparently including healthy and dead birds. Salmonella was isolated and identified using standard bacteriological methods. All presumptive Salmonella isolates were serotyped and tested for antimicrobial susceptibility using 11 different antimicrobials. A total of 58 (6.4%) Salmonella isolates were obtained, and the isolation rate was only statistically significant (p < 0.05) in live birds. The isolates comprised of 13 serovars. The three predominant serovars, Salmonella enterica ser. 6.7:d:- (29.0%), Salmonella Agama (28.0%) and Salmonella Typhimurium (16.0%), were isolated from all three sample types. Rare serovars like Salmonella Albany, Salmonella Colindale, Salmonella Istanbul, Salmonella Larochelle, Salmonella Nigeria and Salmonella Orion were also isolated in this study. A high frequency of resistance was generally observed with all the isolates exhibiting a total of (100%) resistance to ampicillin, cefotaxime and ceftazidime. This study documents the first predominant isolation of S. enterica ser. 6.7:d:- and S. Agama from chickens. It also documents the high frequency of fluoroquinolone and cephalosporins resistance of the isolates indicating the presence of selective pressure in the environment. Controls and targeted interventions against Salmonella and the frequent occurrence of antimicrobial resistance in chickens should be initiated to prevent the spread of this organism.
Salmonellosis is one of the most common and widely distributed food-borne diseases, and the presence of antimicrobial-resistant Salmonella in poultry and poultry products is a global public health problem. Therefore, a cross-sectional study was conducted from November 2016 to July 2017 with an aim of determining the isolation rates of Salmonella species from the intestinal contents of slaughtered chickens, the most common serotypes that invade and colonize the tissues of chickens in Ilorin, and the susceptibilities of the isolated species to commonly used antibiotics. Four hundred samples of intestinal contents from apparently healthy slaughtered chickens and one hundred ready-to-eat chicken gizzards in Ilorin, Kwara State, were examined for the presence of Salmonella and their serotypes. Salmonellae were isolated and identified according to the techniques recommended by the World Health Organization: preenrichment, selective plating, biochemical testing, and serotyping. A total number of forty-three (43) Salmonella isolates consisting of 33 from intestinal contents and 10 from ready-to-eat chicken gizzards were isolated and identified. There was an overall Salmonella prevalence rate of 8.6% (43/500), and the isolates were distributed as follows: gizzard, 2% ( ) and intestinal contents, 6.6% ( ). The predominant serovars were Salmonella enterica subsp. enterica serovar 45: d: 1, 7 (16) and S. Haifa (5). All ready-to-eat chicken gizzards were associated with Salmonella enterica subsp. enterica serovar 45: d: 1, 7 (5). The Salmonella from intestinal contents belong to Salmonella enterica subsp. enterica serovars 45: d: 1, 7 (11) and S. Haifa (5). Salmonella species isolated were 100% resistant to ciprofloxacin, ampicillin, and ceftazidime. This is followed by cloxacillin (81%), tetracycline (75%), and sulfamethoxazole (67%). The Salmonella isolates were, however, 100% sensitive to enrofloxacin, 74% to streptomycin, and 72% to gentamycin antibiotics. The most common serotype was S. enterica subsp. enterica serovar 45: d: 1, 7. All the twenty five Salmonella serovars consisting of twenty-one serotypes ( ), two of the Salmonella that could not be cultured after enrichment, and the two that were contaminated with Proteus possessed the virulence genes of invA and stn. The Salmonella enterica subsp. enterica serovar 45: d: 1, 7 and S. Haifa possess virulence genes so they are potentially virulent for humans in this area. The national and local health authorities in Nigeria should improve hygiene measures especially at retail slaughter markets to reduce salmonellosis which is one of the most important food-borne diseases in humans.
Twenty-six Salmonella enterica serovar Eko isolated from various sources in Nigeria were investigated by whole genome sequencing to identify the source of human infections. Diversity among the isolates was observed and camel and cattle were identified as the primary reservoirs and the most likely source of the human infections.
