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David M. MacAlpine

Duke University

79

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RoboCOP: jointly computing chromatin occupancy profiles for numerous factors from chromatin accessibility data.

2021 Nucleic Acids Research
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Linking the dynamics of chromatin occupancy and transcription with predictive models.

2021 Genome Research
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Cell cycle-dependent chromatin dynamics at replication origins

2021 bioRxiv
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RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy

2020 RECOMB | Research in Computational Molecular Biology
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Capturing the primordial Kras mutation initiating urethane carcinogenesis.

2020 Nature Communications
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Data from: RoboCOP: Multivariate state space model integrating epigenomic accessibility data to elucidate genome-wide chromatin occupancy

2020
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Linking the dynamics of chromatin occupancy and transcription with predictive models

2020 bioRxiv
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Correction to: DNA copy number evolution in Drosophila cell lines

2019 Genome Biology
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Sir2 suppresses transcription-mediated displacement of Mcm2-7 replicative helicases at the ribosomal DNA repeats

2019 PLOS Genetics
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Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair in the absence of DNA replication

2019 bioRxiv
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