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Luke Czapla

Rutgers University

15

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340

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Effect of Tetrameric Base-Pair Context on the Sequence-Dependent Configurations of DNA Minicircles

2019 Biophysical Journal
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DNA topology confers sequence specificity to nonspecific architectural proteins

2014 Proceedings of the National Academy of Sciences of the United States of America
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Effect of confinement on DNA, solvent and counterion dynamics in a model biological nanopore

2014 Nanoscale
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Molecular simulations of aromatase reveal new insights into the mechanism of ligand binding.

2013 Journal of Chemical Information and Modeling
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Interplay of Protein and DNA Structure Revealed in Simulations of the lac Operon

2013 PLOS ONE
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Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations.

2013 Biochemical Society Transactions
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DelEnsembleElec: Computing Ensemble-Averaged Electrostatics Using DelPhi

2013 Communications in Computational Physics
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BROMOC-D: Brownian Dynamics/Monte-Carlo Program Suite to Study Ion and DNA Permeation in Nanopores

2012 Journal of Chemical Theory and Computation
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Understanding apparent DNA flexibility enhancement by HU and HMGB architectural proteins.

2011 Journal of Molecular Biology
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The Role of Architectural Proteins in Lac-Mediated DNA Looping

2011 Biophysical Journal
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