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Florian P. Breitwieser

Johns Hopkins University
Austrian Academy of Sciences

49

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soedinglab/MMseqs2: MMseqs2 Release 13-45111

2021
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Fast and sensitive taxonomic assignment to metagenomic contigs.

2021 Bioinformatics
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Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms

2020 European Journal of Clinical Microbiology & Infectious Diseases
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KrakenUniq: confident and fast metagenomics classification using unique k -mer counts

2018 Genome Biology
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Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

2018 Annals of Internal Medicine
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Deconvoluting Virome-Wide Antiviral Antibody Profiling Data

2018 bioRxiv
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Development and optimization of metagenomic next-generation sequencing methods for cerebrospinal fluid diagnostics

2018 Journal of Clinical Microbiology
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Deconvoluting virome-wide antiviral antibody profiling data

2018
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Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

2017 PLOS ONE
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Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals

2017 AIDS
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