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Songjian Lu

University of Pittsburgh
Texas A&M University

59

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1735

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PEAK2VEC ENABLES INFERRENCE OF TRANSCRIPTIONAL REGULATION FROM ATAC-SEQ

2021 bioRxiv
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BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization

2020 Bioinformatics
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Noisy and Incomplete Boolean Matrix Factorizationvia Expectation Maximization

2019 arXiv: Machine Learning
- Lifan Liang
- Songjian Lu
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Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information

2019 BMC Bioinformatics
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Abstract 2784: Driver genes network promotes mesenchymal to epithelial transition and organ-specific metastasis

2019 Tumor Biology
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Phenotypic Plasticity of Invasive Edge Glioma Stem-like Cells in Response to Ionizing Radiation

2019 Cell Reports
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Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes

2019 Scientific Reports
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Prolonged Cold-Ischemia Induces Necroptotic Cell Death in Ischemia Reperfusion Injury and Contributes to Primary Graft Dysfunction After Lung Transplantation.

2019 American Journal of Respiratory Cell and Molecular Biology
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Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference

2019 PLOS Computational Biology
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Integrating data and knowledge to identify functional modules of genes: a multilayer approach

2019 BMC Bioinformatics
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