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David H. Mathews

University of Rochester Medical Center
University of Rochester

191

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15206

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What the Fork? A Structural Bioinformatics Approach to Decipher Patterns in Arginine-Fork Mediated RNA Recognition

2021 Biophysical Journal
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LinearTurboFold: Linear-Time Global Prediction of Conserved Structures for RNA Homologs with Applications to SARS-CoV-2

2021 bioRxiv
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Pre-mRNA Splicing Factor U2AF2 Recognizes Distinct Conformations of Nucleotide Variants at the Center of the pre-mRNA Splice Site Signal

2021 bioRxiv
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Inverse RNA Folding Workflow to Design and Test Ribozymes that Include Pseudoknots

2021
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Improved and Linear-Time Stochastic Sampling of RNA Secondary Structure with Applications to SARS-CoV-2

2021 bioRxiv
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Thermodynamic Parameters and Design Considerations for Expanded Alphabet P-Z and G-Z Base Pairs in DNA

2021 Biophysical Journal
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RNA Helix Thermodynamics: The End Game

2021 bioRxiv
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Specific length and structure rather than high thermodynamic stability enable regulatory mRNA stem-loops to pause translation

2021 bioRxiv
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Secondary Structure Prediction for RNA Sequences Including N6-methyladenosine

2021 bioRxiv
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LinearTurboFold: Fast Folding and Alignment for RNA Homologs with Applications to Coronavirus

2021 bioRxiv
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