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Alexandre Almeida

European Bioinformatics Institute

18

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1152

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A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae

2021 bioRxiv
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Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle.

2021 Genome Biology
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Massive expansion of human gut bacteriophage diversity.

2021 Cell
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Host adaptation in gut Firmicutes is associated with sporulation loss and altered colonisation patterns

2020 bioRxiv
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Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli.

2020 BMC Genomics
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A comprehensive analysis of the global human gut archaeome from a thousand genome catalogue

2020 bioRxiv
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A human gut bacterial genome and culture collection for improved metagenomic analyses

2019 Nature Biotechnology
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MGnify: the microbiome analysis resource in 2020

2019 Nucleic Acids Research
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Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments

2018 GigaScience
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Citations (58)