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James M. Schupp

Translational Genomics Research Institute
Northern Arizona University

81

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4901

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Expanding the Burkholderia pseudomallei complex with the addition of two novel species: Burkholderia mayonis sp. nov. and Burkholderia savannae sp. nov.

2021 Applied and Environmental Microbiology
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Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.

2020 Nature microbiology
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Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role

2019 Mbio
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Critical transitions in microbial communities: mobile genetic elements as drivers of the microbial community dynamics within activated sludge of wastewater treatment

2018
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Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis

2017 PLOS Neglected Tropical Diseases
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Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects.

2017 International Forum of Allergy & Rhinology
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Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study

2016 Journal of Clinical Microbiology
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Nasp: An accurate, rapid method for the identification of snps in wgs datasets that supports flexible input and output formats

2016
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The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets

2016 bioRxiv
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More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes

2016 PLOS ONE
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