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Yatish Turakhia

Stanford University

22

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305

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phastSim: efficient simulation of sequence evolution for pandemic-scale datasets

2021 bioRxiv
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matUtils: Tools to Interpret and Manipulate Mutation Annotated Trees

2021 bioRxiv
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ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

2021
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A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

2021 bioRxiv
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A fully-automated method discovers loss of mouse-lethal and human-monogenic disease genes in 58 mammals.

2020 Nucleic Acids Research
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Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup

2019 HPCA | High-Performance Computer Architecture
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Darwin: A Genomics Coprocessor

2019 IEEE Micro
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Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.

2019 USENIX ATC | USENIX Annual Technical Conference
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Parallel Approach to Sliding Window Sums.

2018
- Roman Snytsar
- Yatish Turakhia
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Darwin: A Genomics Co-processor Provides up to 15,000X Acceleration on Long Read Assembly

2018 ASPLOS | Architectural Support for Programming Languages and Operating Systems
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