Additional file 8 of Similar yet different: phylogenomic analysis to delineate Salmonella and Citrobacter species boundaries
Ana Victoria C. PilarNicholas PetronellaForest DussaultAdrian J. VersterSadjia BékalRoger C. LévesqueLawrence GoodridgeSandeep Tamber
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Additional file 8. Supplementary information.Keywords:
Citrobacter
To develop a new method for rapid screening suspicious Salmonella. Using L-pyroglutamic acid(PYR) as a substrate fixed on paper disc to detect the enzyme activity on enterobacterial isolated plates to distinguish Salmonella from citrobacter and other enterobacteriaceae. Comparison were made between the standard method and PYRase test in detecting the presence of Salmonella in naturally contaminated food samples. 388 strains of Salmonella and 100 strains of other bacteria were examined. All of the Salmonella's PYRase were negative (without color), and all of the Citrobacter colonies were PYRase-positive(red colour). This test could be accomplished within 2 min after adding the develop reagent. A PYRase test was used to exam Salmonella like colonies isolated on selective agar plate from contaminated food samples,the sensitivity was 100% and the specificity and was 88.89%. [Conclusion] L-PYRase test is a rapid, accurate and simple method for screening Salmonella.
Citrobacter
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Background: Salmonella surveillance relies on invA polymerase chain reaction (PCR) assays for the rapid detection of Salmonella; however, false-positive results have been reported using this method. Objectives: To evaluate the performance and specificity of the published and validated PCR protocols targeting invA gene for the detection of Salmonella. Methods: The performance and specificity of 11 different PCR primer sets were evaluated using Salmonella type strains and Citrobacter spp., Escherichia coli and Serratia spp. isolates recovered during a Salmonella surveillance program. Results: It was revealed that the published PCR protocols using validated primers targeting invA and 16S rRNA genes generated false-positive signals. Importantly, a protocol targeting the ttrA/C genes was able to discriminate Salmonella and non-Salmonella isolates. Conclusions: Detection of Salmonella spp. by means of invA PCR amplification is not reliable. In fact, false-positive results are commonly obtained from Citrobacter, E. coli and Serratia isolates. It is recommended to use other loci, such as ttrA/C genes, for the accurate and reliable detection of Salmonella.
Citrobacter
Serratia
Primer (cosmetics)
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Little is know about the clinical significance of isolating Citrobacter in the clinical laboratory. During a one-year period, 116 Citrobacter isolates were obtained from 77 patients with 83 suspected infectious episodes. The majority of the suspected infectious episodes involved the urinary tract (45%) or respiratory tract (41%). Citrobacter diversus was associated with 42% of the episodes, Citrobacter freundii with 29%, and Citrobacter species with 29%. In 42% of the suspected infectious episodes, the presence of Citrobacter was considered clinically significant; in the others, the significance of the Citrobacter isolates was indeterminate or considered to be commensal. Two thirds of the significant infections were hospital-acquired. Most patients (73%) from whom Citrobacter was cultured had underlying diseases or factors predisposing to infection. These data suggest that Citrobacter is a cause of significant opportunistic nosocomial infection in the hospital.
Citrobacter
Citrobacter freundii
Clinical Significance
Citrobacter rodentium
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A total of 309 Citrobacter strains isolated from patients with acute intestinal infections of obscure aetiology and from healthy subjects were investigated. Species specificity of the bacterial cultures was determined by biochemical tests recommended by the International Enterobacteriaceae Subcommittee. Citrobacter strains were titrated serologically in the reaction of agglutination on glass with a living culture and adsorbed 0-antisera. Eighteen serological 0 groups were identified; 0 groups 3, 9, 23, 1 and 8 were found most frequently. Citrobacter was isolated more frequently from patients with acute intestinal infections than from healthy subjects. Seasonal circulation of Citrobacter strains in spring and summer was established. The number of culture findings of Citrobacter in the patients increased against the background of reduction in the number of cases of bacteriologically confirmed dysentery.
Citrobacter
Etiology
Direct agglutination test
Agglutination (biology)
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Five bacterial strains were isolated from food samples, and were not easily distinguished from Salmonella via conventional methods. These bacterial strains wereidentified as Citrobacter spp. from their biochemical properties. Despite this, their characteristics after being cultured resembled those of Salmonella, with similar kinds of colony formation patterns on XLD, DHL and TSI agar. Since these salmonella-like strains grew at a rate and produced colonies with black centers characteristic of Salmonella, the selective detection of Salmonella in the presence of these salmonella-like strains was impossible, based on conventional methods.
Citrobacter
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Білім берy қоғaмның экономикaлық дaмyының негізі, әлеyметтік тұрaқтылықтың фaкторлaрының бірі, хaлықтың рyхaни-aдaмгершілік әлеyетінің және интеллектyaлдық өсyінің қaйнaр көзі ретінде бaрлық yaқыттaрдa тaптырмaс құндылық болып есептеліп келеді. Aл қaзіргідей aдaм кaпитaлын қaлыптaстырy мен дaмытy мәселесін шешy негізгі міндет ретінде қaрaстырылaтын зaмaндa хaлықтың білімдік қaжеттіліктері өсіп, жоғaры, ортa aрнayлы, кәсіби қосымшa білім aлyғa үміткерлер сaны aртa түсyде. Бұғaн жayaп ретінде білім берy ұйымдaрының сaлaлaнyы aртып, әртүрлі типтегі оқy орындaрының сaны aртyдa, білім берyдің инфрaқұрылымы, бaсқaрy формaлaры, әдістемелік, ғылыми қызмет түрлері дaмyдa. Олaрды білім aлyшылaрдың жеке сұрaныстaры мен мүмкіндіктеріне бaғыттay күшейтілyде. Осығaн орaй білімнің сaпaсынa қойылaтын тaлaптaр aртып, бұл сaлaның әлеyметпен өзaрa әрекеттестігіне негізделген құрылымдық – қызметтік дaмyының көкейтестілігі aртyдa. Мaқaлaдa «серіктестік», «әлеyметтік серіктестік», «білімдегі әлеyметтік серіктестік» ұғым- дaрының мәні aшылып, олaрдың қaлыптaсy және дaмy үрдісіне шолy жaсaлaды, жоғaры оқy орындaрындa педaгогтaрды дaярлayдa әлеyметтік серіктестердің әлеyетін пaйдaлaнyдa бaсшылыққa aлынaтын ұстaнымдaр мен тиімді жолдaры сипaттaлaды. Түйін сөздер: серіктестік, әлеyметтік серіктестік, білімдегі әлеyметтік серіктестік, бірлескен әрекет ұстaнымдaры, әлеуметтік серіктестік әлеуеті. Обрaзовaние является основой экономического рaзвития обществa, одним из фaкторов социaль- ной стaбильности, источником дyховно-нрaвственного потенциaлa и интеллектyaльного ростa людей и во все временa считaлось незaменимой ценностью. И в нaстоящее время, когдa решение проблемы формировaния и рaзвития человеческого кaпитaлa рaссмaтривaется кaк основнaя зaдaчa, рaстyт обрaзовaтельные потребности людей, yвеличивaется количество желaющих полyчить высшее, среднее, специaльное, профессионaльное дополнительное обрaзовaние. В ответ нa это yсиливaется рaзветвленность обрaзовaтельных оргaнизaций, yвеличивaется количество обрaзовaтельных оргaни- зaций рaзличного типa, рaзвивaются инфрaстрyктyрa обрaзовaния, формы yпрaвления, методическaя и нayчнaя деятельность. Yсиливaется их ориентaция нa индивидyaльные потребности и возможности обyчaющихся. В связи с этим повышaются требовaния к кaчествy обрaзовaния, возрaстaет знaчение стрyктyрно-фyнкционaльного рaзвития этой сферы нa основе взaимодействия с обществом. В стaтье рaскрывaется знaчение понятий «пaртнерство», «социaльное пaртнерство», «социaльное пaртнерство в обрaзовaнии», рaссмaтривaется процесс их стaновления и рaзвития, описывaются рyко- водящие принципы и эффективные способы использовaния потенциaлa социaльных пaртнеров в подготовке педaгогических кaдров в высших yчебных зaведениях. Ключевые словa: партнерство, социaльное пaртнерство, социaльное пaртнерство в обрaзовaнии, принципы совместного действия, поненциал социального партнерство. Education is the basis of the economic development of society, one of the factors of social stability, a source of spiritual and moral potential and intellectual growth of people and has always been considered an irreplaceable value. And at the present time, when the solution of the problem of the formation and development of human capital is considered as the main task, the educational needs of people are growing, the number of people wishing to receive higher, secondary, special, professional additional education is increasing. In response to this, the branching of educational organizations is increasing, the number of educational organizations of various types is increasing, the infrastructure of education, forms of management, methodological and scientific activities are developing. Their focus on the individual needs and capabilities of students is increasing. In this regard, the requirements for the quality of education are increasing, the importance of the structural and functional development of this sphere on the basis of interaction with society is increasing. The article reveals the meaning of the concepts of "partnership", "social partnership", "social partnership in education", examines the process of their formation and development, describes the guidelines and effective ways to use the potential of social partners in the training of teachers in higher educational institutions. Keywords: partnership, social partnership, social partnership in education, principles of joint action, the potential of social partnership.
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Salmonellaは代表的な細菌性人獣共通感染症の原因菌の一つとして知られている。欧米諸国では爬虫類はペットとして人気が高く，多くの種類の爬虫類がペットとして飼育されているが，これらの爬虫類が感染源となった人のサルモネラ症が報告されている。近年，我が国でも爬虫類のペットとしての人気が高まっており，さまざまな種類の爬虫類が飼育されるようになってきているが，それに伴いこれら爬虫類に起因する人のサルモネラ症が発生しており，大きな社会問題となっている。爬虫類は高率にSalmonellaを保菌していることが知られているが，爬虫類がどのような経路でSalmonellaを保菌するのかについて検討した報告はほとんどみられず，Salmonellaを保菌するメカニズムについては明らかになっていない。本研究では，Salmonella属菌の保有率が高かったヘビ類に着目し，母ヘビ，体内の卵および孵化後の子ヘビにおけるSalmonella属菌の保有状況を調査し，分離菌株の分子遺伝学的解析を行い，菌株間の関連性を検討することで，母ヘビから子ヘビへのSalmonella属菌の垂直感染の可能性について検討した。
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In the routine testing of foods for Salmonella, Citrobacter and other members of the Enterobacteriaceae often produce colonies which are almost indistinguishable from Salmonella on commonly used selective agars. Biochemical confirmation of such colonies can be expensive and time-consuming. It has been suggested that the enzyme pyrrolidonyl peptidase (PYRase) could be used as a rapid test to distinguish Citrobacter colonies (PYRase-positive) from Salmonella (PYRase-negative). Pure cultures of Salmonella, Citrobacter and other Enterobacteriaceae were tested for PYRase activity; all strains of Salmonella tested were PYRase-negative, and all Citrobacter tested were PYRase-positive. Inoculated and naturally contaminated food samples were tested for the presence of Salmonella by a standard cultural method. A PYR test was used to test Salmonella-like colonies isolated on selective agar and potentially, eliminate PYR-positive isolates from further biochemical testing. The test was able to screen out 6% of colonies selected from samples inoculated with Salmonella, and 43% of colonies selected from uninoculated samples.
Citrobacter
Citrobacter freundii
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A 16S DNA targeted polymerase chain reaction (PCR) method specific for the detection of Salmonella isolates with various serotypes was developed. The primers used for such a PCR method were 16SF1 and 16SIII. 16SF1 is the reverse and complementary strand of 16SI which has been shown to be able to hybridize with Salmonella and Citrobacter spp. 16III on the other hand, is able to hybridize with Klebsiella and Serratia spp. in addition to Salmonella. Although 16SF1 and 16SIII were not specific to Salmonella only, when they were used as PCR primers, only the Salmonella isolates could be specifically detected. The interference from Citrobacter, Klebsiella and Serratia spp. could be prevented. None of the other non‐ Salmonella isolates including strains of the family of Enterobacteriaceae closely related to Salmonella would generate the false‐positive reaction. When this PCR system was used for the detection of Salmonella cells artificially contaminated in food samples, results obtained were satisfactory. A detection limit of N × 10 0 cells per assay could be obtained.
Citrobacter
Serratia
Klebsiella
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Citrobacter
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