Additional file 1: of Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases
Zhìqiáng WúLü LiangJiang DuLi YangXianwen RenBo LiuJinyong JiangJian YangJie DongLilian SunYafang ZhuYuhui LiDandan ZhengChi ZhangHaoxiang SuYuting ZhengHongning ZhouGuangjian ZhuHongying LiAleksei A. ChmuraFan YangPeter DaszakJianwei WangQiyong LiuQi Jin
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Table S1. Samples of the 55 animal species used in this study and the provinces and dates of collection. Table S2. The reads of virus under each family. Table S3. The reads of mammailan virus under each family. Table S4. Origin and accession number of viruses identified in this study. Table S5. Amino acid identity of rodents Arenavirus and representatives of other species. Table S6. The aa identities (%) of the predicted ORF1a and ORF1b between Rodent Arteriviruses and other known members of the family Arteriviridae (including a tentative member, WPDV). Table S7. The aa identities (%) between these hepaciviruses and other known rodent hepacivirus. Table S8. Amino acid identity (%)of rodents Hepatitis E and representatives of other Genotypes. Table S9. The aa identities (%) between these BtCoVs and other known members of the lineage-A beta-CoVs. Table S10. The aa identities (%) between these BtCoVs and other known members of alpha-CoVs. Table S11. Amino acid identity of rodents picornaviruses and representatives of other genera in P1, P2, and P3 regions. Table S12. Pairwise amino acid identities (%) of predicted gene products of RtAp-ParaV/NX2015 compared to other Jeilongvirus members. Table S13. Amino acid identity of rodents parvovirus and representatives of other genera. (XLSX 149 kb)Keywords:
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The exploitation of mammal populations forms in part, the proceedings of a symposium held in London in November, 1994 by two "scientific animal charities", the Universities Federation for Animal Welfare (UFAW) and the Mammal Society. It contains 22 chapters arranged in five sections: Exploitation of mammal populations past, present and future; Harvesting wild mammal populations; Hunting and its impact on wildlife; Wildlife trade and conservation; and Ecotourism-making mammal populations pay.
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Tamanthi Wildlife Sanctuary in the Upper Chindwin district of Myanmar could be one of the most important remaining sites for wildlife in the country. Until recently, insurgency problems prevented officials of the Myanmar Forest Department visiting the area or carrying out any form of management. Yet the sanctuary is essentially intact and, with the exception of rhino, appears to contain viable populations of most large mammal species known from that part of Myanmar. However, hunting and the collection of forest products in the sanctuary are having negative impacts on the wildlife community. The future survival of the Sumatran rhino in the Upper Chindwin area is doubtful. Other large mammal species, such as the tiger and gaur, may follow the rhino towards extinction in the near future. Tamanthi Wildlife Sanctuary will need to be actively protected and managed to ensure that much of Myanmar's wildlife continues to survive in this area, well into the future.
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In Asia many marine mammal species are consumed as food or for other purposes. The prevalence of this exploitation appears to increase from west to east. An escalating use of marine mammals and the emergence of commercialisation of a trade in marine mammals is supported by: o Regular documentation of both open and covert trade; o A shift in focus in some diminishing traditional hunts to other marine mammal species; o A possible revival in some targeted hunts, which had previously ceased; o The recent implication of some cultures, which have little history of marine mammal consumption previously, in targeted hunts; and o The growing importation of marine mammal parts from outside of Asia. The factors that may drive marine mammal use include population reductions in species that have been traditionally targeted; diminishing returns from traditional fisheries; and an increase in market demand for marine mammal products. Lessons from similar studies in terrestrial wildlife trade will better focus future studies of marine mammal use in Asia.
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xvii, 325 p. :ill., maps (chiefly col.) ; 31 cm. Includes bibliographical references. University of Otago department: Anthropology.
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