Nucleotide sequence analysis for a new HLA-B allele HLA-B*13 : 01: 06
2014
Objective To confirm a new allele HLA B*13: 01:06 and analyze its nucleotide sequence. Methods Genomie DNA was extracted using a Qiagen DNA extraction kit. Nueleotide sequences of HLA A, HLA-B, HLA-C and HLA-DRB1 were analyzed by polymerase chain reaction-sequence based typing (PCR-SBT). HLA high-resolution results were assigned, and the nucleotide sequences of HLA B locus was compared with that of HLA-3*13 : 01 : 01. Results The nucieotide sequence of the new allele shows a strong similarity to that of HLA-B*13 = 01:01. One nucleotide in exon 2 has changed from G→A at position 219 (codon 49 GCG→GCA), which however did not result in amino acid change. Conclusion The novel allele verified by sequencing has been submitted to GenBank and officially named as HLA-B*13: 01: 06 by the World Health Organization HLA Nomenclature Committee.
Key words:
Allele; HLA B ; 13:01:06; Sequencing-based typing
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