DiBind : Dierential binding analysis of ChIP-Seq peak data
2016
3 Example: Obtaining differentially bound sites 3 3.1 Reading in the peaksets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 3.2 Counting reads . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 3.3 Establishing a contrast . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 3.4 Performing the differential analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 3.5 Retrieving the differentially bound sites . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
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