The Variation of Microbial (Methanotroph) Communities in Marine Sediments Due to Aerobic Oxidation of Hydrocarbons

Methanotrophs in marine sediments and overlying water attenuate the emissions of methane into the atmosphere and thus play an important role for the global cycle of this greenhouse gas. However, gas released from natural hydrocarbon seeps are not pure methane but commonly mixed hydrocarbons. Currently, how methanotrophic bacteria behave in the co-presence of methane and heavier hydrocarbons remains unknown. In this paper, the bacteria were cultured aerobically in fresh sediment samples (collected from Bohai Bay in eastern China) at 28°C under the atmospheres of pure methane and methane+ethane+propane mixed gas, respectively. The prevailing terrigenous n-alkanes and fatty acids in the original sediment samples varied consistently after incubations, confirming the proceeding of aerobic bacterial activities. The real-time quantitative PCR assay and sequencing of the 16S rRNA and particulate methane monooxygenase (pmoA) genes revealed the changes of microbe communities to a methanotroph-dominating structure after incubations. Particularly, after incubations the family Methylococcaceae (type I methanotrophs) became dominant with proportions higher than 40%, whereas Methylocystaceae (type II methanotrophs) nearly disappeared in all incubated samples. Moreover, the species of methanotrophs from the samples treated with pure methane were dominated by Methylobacter luteus, whereas Methylobacter whittenburyi took the predominant proportion in the samples treated with mixed gas. The phenomenon suggests that some methanotrophs may also utilize ethane and propane. Collectively, this study may help to gain a better understanding of the effects and contributions of microbial activities in marine hydrocarbon seep ecosystems.