HYBRID METODE HIDDEN MARKOV MODEL DENGAN SELF ORGANIZATION MAPS UNTUK IDENTIFIKASI PROTEIN CODING REGIONS PADA GEN DNA DARI ARABIDOPSIS THALIANA
2014
Main issues to identify the order DNA in genome eurkaryote are processed
through the process computing has not been solved. The method Hidden Markov can
overcome Model is applied to these issues, which can be classify, and dis-integrity
data structure DNA. This Research suggests the application methods Hybrid well
with SOM to address the problems in the region identification genome eurkaryote.
The SOM algorithm is applied to overcome the shortage method well especially overfitting
case. Data that is used in this research is genome plants with latin name Arabidopsis
Thaliana.
Accuracy of Hybrid method HMM with SOM will be compared with the
HMM method will be evaluated on two levels, the level nucleotide and exon. At
a level nucleotide will test in terms of sensitivity(Sn), specificity(Sp) and the drag
coefficient correlation(CC), in the same thing at a level exon that will test in terms
of sensitivity(Sn) and specificity (Sp). Test result by applying methods HMM in the
SnHMM = 94% (level nukleotida), SpHMM = 90% (level nukleotida), CCHMM =
2:9%, SnHMM = 82% (level exon), and SnHMM = 90% (level exon). Different
with test result in Hybrid method HMM with SOM shows the SnHybrid = 98% (level
nukleotida), SpHybrid = 94% (level nukleotida), CcHybrid = 2:6%, SnHybrid = 88%
(level exon), and SnHybrid = 94% (level exon).
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