A Short-Term Assessment of Nascent HIV-1 Transmission Clusters Among Newly Diagnosed Individuals Using Envelope Sequence-Based Phylogenetic Analyses

Alexis Kafando,Bouchra Serhir,Florence Doualla-Bell,Eric Fournier,Mohamed Ndongo Sangaré,Christine Martineau,Mohamed Sylla,Annie Chamberland,Mohamed El-Far,Hugues Charest,Cécile Tremblay

A Short-Term Assessment of Nascent HIV-1 Transmission Clusters Among Newly Diagnosed Individuals Using Envelope Sequence-Based Phylogenetic Analyses

2019

Alexis Kafando
Bouchra Serhir
Florence Doualla-Bell
Eric Fournier
Mohamed Ndongo Sangaré
Christine Martineau
Mohamed Sylla
Annie Chamberland
Mohamed El-Far
Hugues Charest
Cécile Tremblay

Abstract The identification of transmission clusters (TCs) of HIV-1 using phylogenetic analyses can provide insights into viral transmission network and help improve prevention strategies. We compa...

Keywords:

Computational biology
Virology
Viral transmission
Biology
Transmission (mechanics)
Phylogenetic tree
newly diagnosed
hiv 1 transmission

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