Biocontrol Activity of Actinomycetes Strains against Fungal and Bacterial Pathogens of Solanum lycopersicum L. and Daucus carota L.: In Vitro and In Planta Antagonistic Activity

Plants are affected by various biotic and abiotic stresses due to climate change. Tomato and carrots are important crops that are attacked by various pathogens. Fourteen plant-growth-promoting bacteria (PGPB) belonging to the genera Streptomyces sp. and Nocardiopsis sp. were selected for the biocontrol of several common fungal and bacterial pathogens. Antifungal activity was assessed against Fusarium oxysporum f. sp. radicis-lycopersici (FORL) and Rhizoctonia solani (RHS). Antibacterial activity was evaluated against Pseudomonas syringae (PS), Pseudomonas corrugata (PC), Pseudomonas syringae pv. actinidiae (PSA), and Pectobacterium carotovorum subsp. Carotovorum (PCC). In vitro antifungal and antibacterial antagonistic activities were evaluated by the dual culture method. Fungal–bacterial interaction areas were analyzed by scanning electron microscopy (SEM). Cell-free culture filtrates (CFs) from strains showing good biocontrol potential were produced and investigated for their in vitro antifungal and antibacterial activity. The two most effective strains were also combined in consortium and utilized for In Planta pre-emergence biocontrol assays on both S. lycopersicum and D. carota. For each pathogenic strain, four experimental conditions were compared: CNT (no PGPB/no infection), PGPB (with PGPB/no infection), PGPB+INF (with PGPB/with infection), and INF (no PGPB/with infection). Streptomyces albidoflavus strain H12 and Nocardiopsis aegyptica strain H14 showed good in vitro antifungal (inhibition of >50%) and antibacterial (inhibition halo of >10 mm) activity. The SEM micrographs showed deterioration of fungal filaments and modification of hyphal structures. The CFs of both strains were also able to inhibit FORL and RHS in in vitro growth (minimum inhibitory concentration of 0.2–0.8%). In planta biocontrol assessments showed that the consortium was effective in reducing the infection effects of both fungal and bacterial pathogens. Dual consortium allowed regular plant development compared to the control. These results confirm the usefulness of actinomycetes strains as a biocontrol agent and can therefore be an alternative to chemicals used in agriculture.