MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches
2019
Background
Metagenomic datasets provide an opportunity to study horizontal gene transfer (HGT) on the level of a microbial community. However, current HGT detection methods cannot be applied to community-level datasets or require reference genomes. Here, we present MetaCHIP, a pipeline for reference-independent HGT identification at the community level.
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