Optimization of cytochrome c detection by acoustic and electrochemical methods based on aptamer sensors

Abstract We report the effect of various factors such as oligonucleotide sequence, buffer composition, ionic strength for optimal determination of cytochrome c (cyt c) by DNA aptamer sensors using thickness shear mode acoustics (TSM) and electrochemical methods. Up to now, several DNA aptamers specific to cyt c have been selected and used in various sensing approaches including optical, electrochemical and mass sensitive transducers. We have analyzed the response of three different aptamers immobilized via biotin-neutravidin method on a gold support by TSM technique. Using this approach we have shown that only 76-length base sequence (apt 76) exhibited specific binding to cyt c with detection limit of 0.50 ± 0.05 nM. This aptamer was then studied under different ionic conditions showing an optimal response for HEPES buffer. Apt 76 based sensor has been also examined by electrochemical methods. However due to the electroactive nature of cyt c, the response of this aptamer was less favorable in comparison with TSM. The apt 76 based sensor was tested also in spiked samples of human plasma by TSM achieving a recovery of 92 ± 6.6% for 1 nM cyt c.