Which methods to choose to correct cell types in genome-scale blood-derived DNA methylation data?
2015
Background High throughput methods such as microarray and DNA-methylation are used to measure the transcriptional variation due to exposures, treatments, phenotypes or clinical outcomes in whole blood, which could be confounded by the cellular heterogeneity [1,2]. Several algorithms have been developed to measure this cellular heterogeneity. However, it is unknown whether these approaches are consistent, and if not, which method(s) perform better.
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