Soil aggregate size mediates the responses of microbial communities to crop rotation

Abstract Soil microorganisms play an essential role in the redistribution of soil aggregate sizes due to the microenvironmental changes. Yet, little is known regarding how individual microbial taxa within different-sized aggregates respond to agronomic practice. This study integrated physical, chemical, and molecular techniques (i.e., high-throughput DNA sequencing and qPCR) to assess the influence of corn-tobacco rotation on the soil microbial community at the soil microenvironment scale, i.e., within mega- (>2 mm), macro- (0.25–2 mm) and micro-aggregate (