Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-

S1 Fig. Comparison of the sequencing samples based on the read mapping statistics. Read mapping statistics were obtained from Qualimap reports of the raw reads mapped on LT2 and SL1344 reference genomes, and re-plotted in R to improve visualization.