An approach to mitigating soil CO2 emission by biochemically inhibiting cellulolytic microbial populations through mediation via the medicinal herb Isatis indigotica

Abstract Greenhouse gases (GHGs, particularly carbon dioxide (CO 2 )) emissions from soil under wheat production are a significant source of agricultural carbon emissions that have not been mitigated effectively. A field experiment and a static incubation study in a lab were conducted to stimulate wheat growth and investigate its potential to reduce CO 2 emissions from soil through intercropping with a traditional Chinese medicinal herb called Isatis indigotica . This work was conducted by adding I. indigotica root exudates based on the quantitative real-time PCR (qPCR) analysis of the DNA copy number of the rhizosphere or bulk soil microbial populations. This addition was performed in relation to the CO 2 formation by cellulolytic microorganisms ( Penicillium oxalicum , fungi and Ruminococcus albus ) to elucidate the microbial ecological basis for the molecular mechanism that decreases CO 2 emissions from wheat fields using I. indigotica . The results showed that the panicle weight and full grains per panicle measured through intercropping with I. indigotica (NPKWR) increased by 39% and 28.6%, respectively, compared to that of the CK (NPKW). Intercropping with I. indigotica significantly decreased the CO 2 emissions from soil under wheat cultivation. Compared with CK, the total CO 2 emission flux during the wheat growth period in the I. indigotica (NPKWR) intercropping treatment decreased by 29.26%. The intensity of CO 2 emissions per kg of harvested wheat grain declined from 7.53 kg CO 2 /kg grain in the NPKW (CK) treatment to 5.55 kg CO 2 /kg grain in the NPKWR treatment. The qPCR analysis showed that the DNA copy number of the microbial populations of cellulolytic microorganisms ( P. oxalicum , fungi and R. albu s) in the field rhizosphere around I. indigotica or in the bulk soil under laboratory incubation was significantly lower than that of CK. This finding indicated that root exudates from I. indigotica inhibited the activity and number of cellulolytic microbial populations, which led to decreased CO 2 emissions, suggesting this plant's potential role in mitigating agricultural GHGs and in supporting agroecology.