Comparison of MALDI and ESI for Relative Quantification of Citrullination via Skewed Isotopic Distribution Patterns

Arginine residues in a protein can be enzymatically deiminated to citrulline residues, and this post-translational modification of proteins, called citrullination, has been known to be associated with autoimmune diseases such as rheumatoid arthritis. Since citrullination of an arginine residue causes a mass shift of only 1 Da, isotopic distribution patterns of citrullinated and its control (non-citrullinated) peptides overlap each other, and the resulting isotopic pattern is skewed with respect to that of the control peptide. Recently, Deforce and coworkers utilized the citrullination-induced skewed isotopic patterns for estimating the extent of citrullination (J. Proteome Res. 2012, 11, 5245). However, electrospray ionization (ESI), which Deforce and coworkers employed, is not fully suitable for this type of quantification because the number of potential charge sites on a citrullinated peptide is less than that on its control peptide and this leads to different ion abundances for a given charge state. In this study, we employed matrix-assisted laser desorption/ionization (MALDI) instead of ESI for quantification of citrullination because the preference for singly charged ion formation by MALDI may overcome the aforementioned issue. Our results show that the isotopic patterns generated by MALDI time-of-flight (TOF) mass spectrometry (MS) reflect the citrullination contents better than those generated by ESI linear ion trap (LIT) MS.