1,1-Bis-(4-methoxyphenyl)-1′-pyrenyl methyl (bmpm): a new fluorescent 5′ protecting group for the purification of unmodified and modified oligonucleotides

Abstract By replacing the phenyl by a pyrenyl in the dimethoxytrityl (DMTr) group commonly used for 5′-protection in oligonucleotide synthesis, we have obtained a fluorescent acid-labile protecting group which exhibits similar chemical properties to those of DMTr. Here we demonstrate the usefulness of the new protecting group in the purification of both charged and neutral DNA fragments.