A common variant near the KCNJ2 gene is associated with T-peak to T-end interval

Background T-peak to T-end (TPE) interval on the electrocardiogram is a measure of myocardial dispersion of repolarization and is associated with an increased risk of ventricular arrhythmias. The genetic factors affecting the TPE interval are largely unknown. Objective To identify common genetic variants that affect the duration of the TPE interval in the general population. Methods We performed a genome-wide association study on 1870 individuals of Finnish origin participating in the Health 2000 Study. The TPE interval was measured from T-peak to T-wave end in leads II, V 2 , and V 5 on resting electrocardiograms, and the mean of these TPE intervals was adjusted for age, sex, and Cornell voltage-duration product. We sought replication for a genome-wide significant result in the 3745 subjects from the Framingham Heart Study. Results We identified a locus on 17q24 that was associated with the TPE interval. The minor allele of the common variant rs7219669 was associated with a 1.8-ms shortening of the TPE interval ( P = 1.1 × 10 −10 ). The association was replicated in the Framingham Heart Study (−1.5 ms; P = 1.3 × 10 −4 ). The overall effect estimate of rs7219669 in the 2 studies was −1.7 ms ( P = 5.7 × 10 −14 ). The common variant rs7219669 maps downstream of the KCNJ2 gene, in which rare mutations cause congenital long and short QT syndromes. Conclusion The common variant rs7219669 is associated with the TPE interval and is thus a candidate to modify repolarization-related arrhythmia susceptibility in individuals carrying the major allele of this polymorphism.