Integrative network analysis revealed molecular mechanisms of urine urea output in lactating dairy cows: Potential solutions to reduce environmental nitrate contamination.

Abstract Background The enriched nitrogenous compounds in the dairy farms negatively affect the surrounding soil quality and air condition. The objective of this study is to investigate the transcriptomes of five key tissues involved in nitrogen metabolism and their changes under different diets to elucidate the molecular regulatory mechanisms of urine urea nitrogen (UUN) yield, one of the indicators of nitrogenous compound secretion of dairy cows. Results Cows fed high quality forage-based diet had lower UUN content and UUN yield, compared to those fed low quality forage (crop byproducts) based diets. From the transcriptomes of rumen, duodenum, jejunum, liver and udder, key driver genes and their UUN yield-associated functional gene networks were identified. In addition, the functional networks and expression of key drivers in various tissues (such as S100A8, CA1 and BPIFA2C in the duodenum; A2ML1, HMGCS2 and S100A12 in the jejunum; CYP2B6 and GLYCAM1 in the liver; APOE in the udder) changed in the cows fed crop byproducts based diet, which might be the predominant molecules to drive the increase UUN yield in these cows. Conclusion The information suggested that gut, liver and udder play important roles in regulating UUN yield, which could regulate nitrogen excretion waste. These findings provide fundamental information on future nutritional intervention strategies to reduce the UUN yield from dairy cows fed human inedible crop byproducts, which is vital for a sustainable and environmentally friendly dairy industry.