Microarray analysis of regional dura mater and identification of a transcription factor regulating epithelial to mesenchymal cell transitions

Abstract Introduction: Although a wealth of data demonstrates that regionally patterned dura mater regulates suture fusion or patency, the onset and extent of this patterning remains unknown. In this study we used microarray analyses as a starting point to investigate the differences in suture-specific dura mater from the mouse posterior frontal (PF) and sagittal (SAG) suture. Methods: Regional dura mater was harvested from the PF and SAsutures of 15 and 25 day male CD-1 mice (n = 40 each) and RNA isolated. Microarray analyses were performed using 42,000 element cDNA arrays. Slug was also evaluated in non-suture dura from young (5-day-old) and adult (60-day-old) animals. Investigation into regulation of novel genes, such as the transcription factor Slug, were carried out using rat calvarial osteoblasts stimulated with FGF-2, TGF-beta 1, and BMP2 and 4. Results: Microarray analyses demonstrated differential regulation of over 220 genes in the PF suture at d15, and over 280 genes at d25. Although the number of genes down-regulated was similar, there was a dramatic increase in the number of genes up-regulated in the PF suture at d25 vs. d15 (137 vs. 43). Distinct patterns of expression were seen for several groups of genes, including cytokines (FGF and FGF receptors) and extra-cellular matrix molecules (Col-1, osteopontin, osteocalcin). Several novel genes were identified, including the transcription factor Slug. QRT-PCR verified a > 4-fold increase in Slug mRNA in PF vs. SAG dura, and a > 3-fold increase in young vs. adult dura mater. Functional studies demonstrated a selective inhibition of Slug mRNA in osteoblasts by FGF-2 and TGF-beta 1, but not the BMPs, up to 24 hrs post stimulation (see figure). Conclusions: Our data demonstrate genomic patterning of regional dura mater as early as ten days prior to PF suture fusion. In addition we show that the transcription factor Slug, an evolutionarily conserved gene involved in epithelial-to-mesenchymal cell transitions, is regulated by two growth factors known to be expressed in dura mater.