Phylogenetic analysis of Newcastle disease viruses isolated from asymptomatic guinea fowls (Numida meleagris) and Muscovy ducks (Cariana moscata) in Nigeria

Four Newcastle disease virus isolates were recovered from asymptomatic guinea fowl (Numida meleagris galeata) and Muscovy ducks (Cariana moscata). For the purpose of molecular identification and phylogeny, phylogenetic characterization was performed to identify the pathotypes. All four viruses had a cleavage motif 112RRQKRF117 which is characteristic of virulent strains. The isolates grouped with viruses previously reported as sub-lineage 5g from chickens in Nigeria. This study report for the first time the identification of the virulent sub-lineage 5g Newcastle disease virus from apparently healthy guinea fowl and domestic ducks in Nigeria, and since infections were sub-clinical, it suggest that these species could play a role in the spread and transmission of virulent Newcastle disease virus that can infect other poultry. The isolation and identification of virulent Newcastle disease virus in these unusual hosts and the high sequence similarity (99.3–100 %) between viruses in this study with strains reported for Niger and Cameroun gives insights into the ecology of virulent Newcastle disease viruses and suggests some cross-border movement and trade in live poultry.