Functional Redundancy in Ocean Microbiomes Controls Trait Stability

Abstract Advances in nucleic acid sequencing technology have revealed that, in many microbial ecosystems, the same ecosystem function or trait is performed by multiple species or taxa. Theory, developed in the context of macroecology, predicts that communities with high functional redundancy are less likely to lose functions due to species extinction compared to communities with low functional redundancy. It is not clear whether this is the case for microbial communities, particularly on the landscape scale. In part, the lack of quantitative measures for functional redundancy in microbial ecosystems has been prohibitive in addressing this question. We recently proposed a quantitative functional redundancy metric, contribution evenness, which measures how evenly taxa in a community contribute to an ecosystem function or trait. Using transcriptomes deposited in the Ocean Microbial Reference Gene Catalog (OM-RGC.v2), a catalog of genes and transcripts sequenced by the TARA Ocean expedition, we quantified the functional redundancy for 4,314 KEGG Orthologs (KOs) across 124 marine sites. Functional redundancy was highly correlated with a latent variable reflecting few ocean physiochemical parameters and was systematically higher at the poles than in non-polar regions. Functional richness β-diversity among non-polar sites was higher than that among polar sites, indicating that microbial ecosystem functions are more similar among polar sites than among non-polar sites. These observations combined provide evidence that functional redundancy influences microbial ecosystem function stability on spatiotemporal scales consistent with surface ocean mixing. We suggest that future changes in ocean physiochemistry will likely influence this stability.