High-resolution, long-term isotopic and isotopologue variation identifies the sources and sinks of methane in a deep subsurface carbon cycle

Abstract This study applies a combined isotope and doubly-substituted isotopologue (‘clumped’) methane approach to samples collected over a 9-year long-term experiment at the Kidd Creek scientific observatory located 2.4 and 2.9 km depth below surface, combined with previously published data from 2.1 km below surface. The observatory is located in a fractured rock system within Kidd Creek Mine in Timmins, Ontario, Canada, situated within a 2.7 Ga Volcanogenic Massive Sulphide (VMS) deposit on the Canadian Shield. Isotope and isotopologue methane data suggest a temporal variation in the various sources of methane within the fracture fluids system between 2.1 and 2.9 km below surface. Predominantly abiogenic methane is identified in samples collected from the deepest level of the mine (2.9 km). Comparing new data from the 2.4 km level with previous data from 2.1 km suggests addition of a small component of microbially-generated methane to the fracture water systems at 2.4 km. The temporal evolution of the methane isotopologue signatures suggest an additional process is occurring within these waters. Specifically, methane in samples from 2.4 km (and some from 2.9 km) approach low-temperature thermodynamic equilibrium in clumped isotopologue space, which is not consistent with kinetically-controlled methane production (either microbial or abiogenic). Anaerobic Oxidation of Methane (AOM) during microbial methanotrophy is shown to be the most likely process to drive such re-equilibration via isotopic bond re-ordering. This study provides an unprecedented high-resolution temporal record over more than a decade for methane in a deep subsurface crystalline environment and demonstrates the advantages of clumped isotopologue studies to identify multiple processes controlling the methane cycle in these systems including both abiotic and biotic methane production and methanotrophy.