Genome-wide association studies of cryostability of semen in roosters.

Conservation of genetic resources by semen cryopreservation is essential for biodiversity conservation and storage of rare poultry breeds. Despite the widespread use of this method not all individuals presentia similar capacity for semen to be used after defrosting. The aim of the current study was to identify SNP markers and linked candidate genes potentially associated with rooster (Gallus gallus) sperm motility after cryopreservation. Genome-wide association studies were performed using 33 roosters from four breeds genotyped using Illumina Chicken 60K SNP BeadChip Calculations were performed using PLINK and EMMAX software. Significant SNP associations rs15557972 (p⟨1.36E-07) on chromosome 10 in the LOXL1 gene and rs15751385 (p⟨6.10E-06) on chromosome 6 in the intron of the ENSGALG00000052127 gene were identified. These findings associated with sperm motility SNPs will help to develop strategies for the selection of valuable individuals and the efficient conservation of the gene pool.