Analysis of isoaspartate in peptides and proteins without the use of radioisotopes.

Abstract A rapid and sensitive HPLC-based method for quantitating isoaspartate levels in peptides and proteins is described. The analyte is incubated for 40 min with S -adenosyl- l -methionine and the commercially available enzyme protein l -isoaspartyl methyltransferase. Methylation of isoaspartyl sites results in stoichiometric production of S -adenosyl- l -homocysteine that is separated from the other components of the reaction by reversed-phase HPLC and quantitated online by absorbance at 260 nm. This method can accurately detect 5 pmol or less of isoaspartate and works with tryptic digests as well as intact proteins. Using a commercially available isoaspartyl peptide, the relationship between isoaspartate levels and S -adenosyl- l -homocysteine production was found to be linear and stoichiometric over a range of 5–250 pmol. Compared to methods that measure [ 3 H]methanol production after methylation with S -adenosyl- l -[ methyl - 3 H]methionine, the HPLC method is safer, faster, less expensive, and equally sensitive.