Self-assembly of 2,6-dimethylpyridine on Cu(110) directed by weak hydrogen bonding

Abstract Sequential stages of formation of a self-assembled monolayer of flat-lying 2,6-dimethylpyridine molecules on a single crystal Cu(1 1 0) surface have been observed by low-temperature scanning tunneling microscopy (LT-STM). At an adsorption temperature of 10 K, all of the molecules are randomly distributed at low coverage upon adsorption. The isolated molecules align their molecular axes parallel to the 〈0 0 1〉 azimuth of the Cu lattice. The nitrogen atom in the molecule is located at the four-fold hollow site. Upon annealing to 100 K, the molecules associate to form head-to-head dimers. The dimer units involve a pair of weak hydrogen bonds between methyl group-hydrogen atoms and N moieties on adjacent molecules, forming a core structure for further growth. In a later stage of self-assembly, single head-to-tail weak hydrogen bonds between ring C–H bonds and N moieties form in chains on the periphery of the central cores, leading to larger domains with a c(6 × 2) overlayer structure.