The phenotypic characterization and antibiotic susceptibility patterns of 72 environmental isolates of Vibrio spp. collected from six aquaculture sites along the west coast of Sabah, Borneo, Malaysia was investigated. Up to 21 conventional biochemical tests were carried out and the sensitivity of the isolates against 16 antibiotics were tested using the disk diffusion method. In the present study, 11 species of vibrios were isolated with varying percentage of occurrences, with the three most abundant species being Vibrio harveyi (22.2%), V. parahaemolyticus (22.2%) and V. alginolyticus (19.4%). The isolates produced varying results in the biochemical tests. All environmental Vibrio isolates were found sensitive to chloramphenicol, nalidixic acid and oxolinic acid but exhibited resistance to vancomycin and penicillin. Susceptibility was variable for other antibiotics. As for V. alginolyticus, it was found that 100% of the isolates were sensitive to chloramphenicol, nalidixic acid and oxolinic acid but resistant to ampicillin, novobiocin, penicillin and vancomycin. Meanwhile, all V. harveyi isolates were sensitive to chloramphenicol, furazolidone, nalidixic acid,nitrofurantoin and oxolinic acid but resistant to penicillin and vancomycin. All V. parahaemolyticus isolates were observed sensitive to chloramphenicol, nalidixic acid and oxolinic acid but resistant to ampicillin, penicillin and vancomycin. Since all three are important species implicated in fish and shrimp disease, and two (V. parahaemolyticus and V. alginolyticus) can cause clinical ailments in humans, microbial diversity at similar sites should be investigated further.
Abstract Studies have shown that cultivars of the carrageenophytes Kappaphycus and Eucheuma are clones of a limited number of strains originally domesticated from wild populations. For the development and selection of new cultivars, it is important that a comprehensive record of available variants exists. This study was conducted to provide up-to-date analysis and compilation of the current state of cultivars as the last list of cultivars was compiled nearly a decade ago. The present study analyzed the cox 2–3 spacer and cox 1 (1356 bp) genetic diversity of cultivars collected from 2019 to 2020 from the east coast of Sabah where the seaweed farms are concentrated. These data were compared with cultivars reported from 2010 to 2012 to assess changes, if any, to the gene pool of farmed eucheumatoid in Malaysia. Kappaphycus alvarezii , K. striatus , and K. malesianus are currently cultivated while Eucheuma denticulatum is no longer an important cultivar compared to a decade ago, probably due to its lower price. Analysis of the cox 2–3 spacer revealed a new haplotype, LBT10, and, by including published GenBank data, a further four previously unnamed haplotypes were recognized from Sabah. This study confirms that there is a limited gene pool within cultivars in Malaysia and suggests the need for new or genetically diverse cultivars which can adapt to a changing environment, to ensure a more sustainable carrageenan industry.
A background study is important for the conservation and stock management of a species. Terapon jarbua is a coastal Indo-Pacific species, sourced for human consumption. This study examined 134 samples from the central west and east coasts of Peninsular (West) Malaysia and East Malaysia. A 1446-bp concatenated dataset of mtDNA COI and Cyt b sequences was used in this study and 83 haplotypes were identified, of which 79 are unique haplotypes and four are shared haplotypes. Populations of T. jarbua in Malaysia are genetically heterogenous as shown by the high level of haplotype diversity ranging from 0.9167–0.9952, low nucleotide diversity ranging from 0.0288–0.3434, and high F ST values (within population genetic variation). Population genetic structuring is not distinct as shown by the shared haplotypes between geographic populations and mixtures of haplotypes from different populations within the same genetic cluster. The gene flow patterns and population structuring observed among these regions are likely attributed to geographical distance, past historical events, allopatric speciation, dispersal ability and water currents. For instance, the mixture of haplotypes revealed an extraordinary migration ability of T. jarbua (>1200 km) via ancient river connectivity. The negative overall value of the neutrality test and a non-significant mismatch distribution are consistent with demographic expansion(s) in the past. The median-joining network concurred with the maximum likelihood haplotype tree with three major clades resolved. The scarcity of information on this species is an obstacle for future management and conservation purposes. Hence, this study aims to contribute information on the population structure, genetic diversity, and historical demography of T. jarbua in Malaysia.
Abstract The demersal brown banded bamboo shark Chiloscyllium punctatum is a major component of sharks landed in Malaysia. However, little is known about their population structure and the effect of high fishing pressure on these weak swimming sharks. Both mitochondrial DNA control region (1072 bp) and NADH dehydrogenase subunit 2 (1044 bp) were used to elucidate the genetic structure and connectivity of C. punctatum among five major areas within the Sundaland region. Our findings revealed (i) strong genetic structure with little present day mixing between the major areas, (ii) high intra-population genetic diversity with unique haplotypes, (iii) significant correlation between genetic differentiation and geographical distance coupled with detectable presence of fine scale geographical barriers (i.e. the South China Sea), (iv) historical directional gene flow from the east coast of Peninsular Malaysia towards the west coast and Borneo, and (v) no detectable genetic differentiation along the coastline of east Peninsular Malaysia. Genetic patterns inferred from the mitochondrial DNA loci were consistent with the strong coastal shelf association in this species, the presence of contemporary barriers shaped by benthic features, and limited current-driven egg dispersal. Fine scale population structure of C. punctatum highlights the need to improve genetic understanding for fishery management and conservation of other small-sized sharks.
Abstract The application of biosecurity in seaweed aquaculture plays an important role in reducing the impact of disease and pest outbreaks. The continuous occurrence of seaweed pests including the macroalgal epiphytes, epi-endophytic filamentous algae and biofilms on Kappaphycus farms may also potentially induce further incidences of the ice-ice syndrome. In this study, on-farm biosecurity management measures were tested on the commercially grown seaweeds Kappaphycus malesianus and Kappaphycus alvarezii during peak ice-ice season at Gallam-Gallam Village, Sabah, Malaysia. The investigation was focused on preventative control measures including the early detection of the ice-ice syndrome and pests through propagule health checks, regular cleaning of the crop thallus and associated long-line ropes and monitoring of the environment. Farm procedures and practices were also assessed in terms of their biosecurity ‘risk’ using the hazard analysis and critical control point (HCCAP) approach. Observations were replicated in two different farm management systems; one system adopted routine biosecurity measures and the other had no biosecurity measures. The results showed that the ice-ice syndrome and pest outbreak was significantly decreased by 60–75% for K. malesianus and 29–71% for K. alvarezii at the farm which adopted the routine biosecurity measures compared with the no biosecurity treatment. The biosecurity measures also significantly improved growth rate and seaweed quality. The infection levels of the epi-endophyte Melanothamnus sp. contributed to the ice-ice syndrome in K. malesianus , whilst the epiphyte coverage was correlated to the ice-ice incidence in K. alvarezii . This study provides the first evidence of biosecurity management measures significantly decreasing the incidence of the ice-ice syndrome and pests on a commercial seaweed farm.
The eucheumatoids Kappaphycus and Eucheuma are cultivated in tropical or subtropical regions for the production of carrageenan, a hydrocolloid widely used in the food and cosmetic industries. Kappaphycus alvarezii is a highly valued economic crop in the Coral Triangle, with the Philippines, Indonesia and Malaysia ranked among the largest producers. In the absence of measures to mitigate climate change, extreme events including heatwaves, typhoons, severe El Niño and La Niña, are expected to increase in frequency and magnitude. This inadvertently brings adverse effects to the seaweed cultivation industry, especially in the tropics. Temperatures are rapidly reaching the upper limit of biologically tolerable levels and an increase in reports of ice-ice and pest outbreaks is attributable to these shifts of environmental parameters. Nevertheless, few reports on the response of eucheumatoids to a changing environment, in particular global warming, are available. Understanding the responses and possible mechanisms for acclimation to warming is crucial for a sustainable seaweed cultivation industry. Here, the physiological and biochemical responses of K. alvarezii to acute warming indicated that the strain used in the current study is unlikely to survive sudden increases in temperature above 36°C. As temperature increased, the growth rates, photosynthetic performance, phycocolloid quality (carrageenan yield, gel strength and gel viscosity) and pigment content (chlorophyll-a, carotenoid and phycobiliproteins) were reduced while the production of reactive oxygen species increased indicating the occurrence of stress in the seaweeds. This study provides a basis for future work on long term acclimation to elevated temperature and mesocosm-based multivariate studies to identify heat-tolerant strains for sustainable cultivation.
The present study was conducted as a continuation of our previous study on the effects of fish meal replacement with soy bean meal, SBM in the diets of tiger grouper, Epinephelus fuscoguttatus which revealed the possible level of fish meal protein replacement of 30% with positive effect of phytase supplementation in one of the test diet. In the present study, all experimental diets with SBM inclusion (10%, 20%, 30%, 40% replacement levels) were supplemented with phytase and fed to juvenile tiger grouper with initial body weight of 44.57 ± 0.28 g for eight weeks. Apart from the effects on growth performance, diet utilization and fish whole-body composition, apparent digestibility coefficient of diets was also measured. Similar findings to our previous experiment were observed in the present study. Diet SM40P (40% replacement level) had produced the poorest growth performance and feed conversion ratio (FCR). However, it was observed that FCR of SM40P was improved when compared to SM40 (without phytase) in our previous experiment. Other than that, SBM-based diets were performed as good as the control diet in terms of growth, feed utilization and survival rate. Replacement of fish meal did not significantly influence body composition, except for whole body lipid content in SM40P. In general, dry matter and protein apparent digestibility coefficients (ADC) of the test diets were influenced by SBM inclusion in the diets. However, crude lipid ADC was very high in all dietary treatments indicating efficient utilization of dietary lipid by juvenile tiger grouper. The findings of the present study confirmed that SBM can be used to replace FM at a level of up to 30% and supplementation of phytase in SBM-based diets is recommended to improve the diet performance.
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