Abstract 2‐Hydroxy‐4‐methoxybenzyl‐amino acid residues inhibit interchain association in solid phase peptide synthesis. They are easily introduced through their N , O ‐bisFmoc derivatives. Preparation of a range of these derivatives is described.
The preparation of side-chain-to-side-chain-cyclised peptides through lactam bridge formation requires orthogonal protecting groups for side-chain amino and carboxylate functionalities. Use of the 4-{N-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)-3-methylbutyl]amino}benzyl ester (Dmab) group for this role in the protection of the glutamyl side-chain resulted in the formation of unexpected side-products. During synthesis of fully protected peptide targets, Nα-pyroglutamyl chain-terminated peptides were observed. Pyroglutamyl peptides were not observed in analogous peptides synthesised using the traditional tert-butyl ester protecting group. Selective removal of the Dmab group proceeds through a two-stage procedure, hydrazinolytic cleavage of the dimedone moiety followed by 1,6-elimination of the resulting peptide-glutamyl 4-aminobenzyl ester. The latter reaction is sufficiently slow to allow isolation of the transiently stable glutamyl derived 4-aminobenzyl ester peptide. Attempted side-chain-to-side-chain cyclisation (through orthogonally protected Glu and Lys residues) of peptides prepared via Glu(ODmab) failed and led to modification of the Lys Nε-amino group when 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU) was used as carboxy-activating reagent. Analogous peptides prepared utilising allyl side-chain protection for glutamyl residues were successfully cyclised using HBTU.
A new synthesis of azapeptides for use in the study of a proteolytic enzyme associated with Alzheimer's disease is described. The method utilizes fluoren-9-ylmethoxycarbonyl (Fmoc) amino acid carbazates and hydrazides in the Fmoc/tert-butyl/polyamide technique. The preparation of these compounds is presented. Reaction of Fmoc-amino acid hydrazides with an appropriate aldehyde, followed by reduction, gave fully protected amino acid carbazate dipeptide synthon. These derivatives were used to prepare aza amino acid peptide analogues by reaction with a resin-bound amino group, activated with bis-2,4-dinitrophenyl carbonate in the presence of a base. With this activation of the amino group, hydantoin is formed in a major side-reaction, but the cyclisation could be virtually eliminated by omission of the base from the activation procedure. Upon final trifluoroacetic acid-mediated cleavage of the azapeptide, trifluoroacetylation of the N-terminal serine residue was observed.
A therapeutic rationale is proposed for the treatment of inflammatory diseases, such as rheumatoid arthritis (RA), by specific targeting of the JAK1 pathway. Examination of the preferred binding conformation of clinically effective, pan-JAK inhibitor 1 led to identification of a novel, tricyclic hinge binding scaffold 3. Exploration of SAR through a series of cycloamino and cycloalkylamino analogues demonstrated this template to be highly tolerant of substitution, with a predisposition to moderate selectivity for the JAK1 isoform over JAK2. This study culminated in the identification of subnanomolar JAK1 inhibitors such as 22 and 49, having excellent cell potency, good rat pharmacokinetic characteristics, and excellent kinase selectivity. Determination of the binding modes of the series in JAK1 and JAK2 by X-ray crystallography supported the design of analogues to enhance affinity and selectivity.