Ji‐Dong Gu

Research Field

Information of genome bins (separate file). The completeness, contamination and strain heterogeneity of GBs were evaluated by CheckM. The columns for taxonomy were splited into three, within which the ‘ProDeGe_Tax’ column recorded the information from ProDeGe server based on BlastP search, the ‘Rast_Closet_Spp.’ column recorded information from RAST server using its ‘View closest neighbors’ function and the ‘Phylophlan_Assignment’ column recorded the lineage output using Phylophlan. (XLSX 18 kb)

Table (database)

10.6084/m9.figshare.5765280

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Binding characteristics of copper and cadmium by cyanobacterium Spirulina platensis

Journal of Hazardous Materials (2011)

Linchuan Fang Chen Zhou Peng Cai Wenli Chen Xingmin Rong

Spirulina (dietary supplement)

Biosorption

10.1016/j.jhazmat.2011.03.122

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Citations (121)

Biodegradability of atrazine, cyanazine, and dicamba in wetland soils

Ji‐Dong Gu Duane F. Berry Ronald H. Taraban D. C. Martens H. L. Walker

Dicamba

Source

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Citations (17)

Biofouling and Prevention

Elsevier eBooks (2012)

Ji‐Dong Gu

Biofouling

10.1016/b978-1-4377-3455-3.00008-0

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Citations (17)

New insights on nitrogen transformation and attack on world stone monuments

Trends in Microbiology (2025)

Pengfei Hu Ji‐Dong Gu

10.1016/j.tim.2025.01.002

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Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota

The ISME Journal (2018)

Yang Liu Zhichao Zhou Jie Pan Brett J. Baker Ji‐Dong Gu

Mixotroph

10.1038/s41396-018-0060-x

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Citations (103)

Additional file 3: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

Figshare (2018)

Xiaobo Liu Meng Li Cindy J. Castelle Alexander J. Probst Zhichao Zhou

Dataset S2 Neighbor-Joining tree based on 663 representative 16S rRNA alignment (Additional file 7: Dataset S5), basis for Additional file 1: Figure S2, in newick format (663_OTU_800bp_NJ_tree.nwk, generated by MEGA7 seeing Additional file 6: Supplementary Methods). (NWK 25 kb)

10.6084/m9.figshare.6465707

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Responses of bacterial and fungal communities to an elevation gradient in a subtropical montane forest of China

Applied Microbiology and Biotechnology (2012)

Han Meng Ke Li Ming Nie Jia-Rong Wan Zhe‐Xue Quan

Elevation (ballistics)

Southern china

10.1007/s00253-012-4063-7

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Citations (98)

The community distribution of bacteria and fungi on ancient wall paintings of the Mogao Grottoes

Scientific Reports (2015)

Yantian Ma He Zhang Du Ye Tian Tian Ting Xiang

In this study, we compared the microbial communities colonising ancient cave wall paintings of the Mogao Grottoes exhibiting signs of biodeterioration. Ten samples were collected from five different caves built during different time periods and analysed using culture-independent and culture-dependent methods. The clone library results revealed high microbial diversity, including the bacterial groups Firmicutes, Proteobacteria, Actinobacteria, Acidobacteria, Cyanobacteria, Bacteroidetes, Gemmatimonadetes, Planctomycetes and Chloroflexi and the fungal groups Euascomycetes, Dothideomycetes, Eurotiomycetes, Sordariomycetes, Saccharomycetes, Plectomycetes, Pezizomycetes, Zygomycota, and Basidiomycota. The bacterial community structures differed among the samples, with no consistent temporal or spatial trends. However, the fungal community diversity index correlated with the building time of the caves independent of environmental factors (e.g., temperature or relative humidity). The enrichment cultures revealed that many culturable strains were highly resistant to various stresses and thus may be responsible for the damage to cave paintings in the Mogao Grottoes.

Acidobacteria

Gemmatimonadetes

Chloroflexi (class)

Planctomycetes

10.1038/srep07752

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Citations (87)

Microbial Biofilms, Fouling, Corrosion, and Biodeterioration of Materials

Elsevier eBooks (2018)

Ji‐Dong Gu

Biofouling

10.1016/b978-0-323-52472-8.00014-9