Stem cells are crucial in morphogenesis in plants and animals. Much is known about the mechanisms that maintain stem cell fates or trigger their terminal differentiation. However, little is known about how developmental time impacts stem cell fates. Using Arabidopsis floral stem cells as a model, we show that stem cells can undergo precise temporal regulation governed by mechanisms that are distinct from, but integrated with, those that specify cell fates. We show that two microRNAs, miR172 and miR165/166, through targeting APETALA2 and type III homeodomain-leucine zipper (HD-Zip) genes, respectively, regulate the temporal program of floral stem cells. In particular, we reveal a role of the type III HD-Zip genes, previously known to specify lateral organ polarity, in stem cell termination. Both reduction in HD-Zip expression by over-expression of miR165/166 and mis-expression of HD-Zip genes by rendering them resistant to miR165/166 lead to prolonged floral stem cell activity, indicating that the expression of HD-Zip genes needs to be precisely controlled to achieve floral stem cell termination. We also show that both the ubiquitously expressed ARGONAUTE1 (AGO1) gene and its homolog AGO10, which exhibits highly restricted spatial expression patterns, are required to maintain the correct temporal program of floral stem cells. We provide evidence that AGO10, like AGO1, associates with miR172 and miR165/166 in vivo and exhibits "slicer" activity in vitro. Despite the common biological functions and similar biochemical activities, AGO1 and AGO10 exert different effects on miR165/166 in vivo. This work establishes a network of microRNAs and transcription factors governing the temporal program of floral stem cells and sheds light on the relationships among different AGO genes, which tend to exist in gene families in multicellular organisms.
Far-red photons (700–750 nm) can accelerate crop growth during indoor production through both physiological and morphological processes. A previous study showed that far-red photons can drive photosynthesis with efficiency similar to that of traditionally defined photosynthetically active photons (400–700 nm) if they are provided together with shorter-wavelength photons. Far-red photons also promote leaf and canopy expansion, which can increase light interception and growth. This study aimed to distinguish the contribution of morphological and physiological changes to crop growth induced by substituting red photons with far-red photons. We studied the long-term effects of substituting red photons with far-red photons on canopy light interception and whole-plant photosynthesis. ‘Little Gem’ lettuce (Lactuca sativa) seedlings were grown under four light spectrums of the same total photon flux density (400–750 nm). In addition to a background of a mixture of white and blue photons of 150 μ mol⋅m −2 ⋅s −1 , we provided 51 μ mol⋅m −2 ⋅s −1 red photons, far-red photons, or mixtures of red and far-red photons. In the first run, plants were harvested twice. The first harvest was at canopy closure, and the second harvest was when plants reached full size. In the second run, we harvested lettuce plants more frequently to minimize leaf overlap and interplant competition. We found that far-red photon substitution promoted leaf and canopy expansion and increased light interception. The effect of far-red photon substitution on leaf and canopy expansion was stronger in the second run than in the first run, likely because of lower plant density in the second run when plants were harvested more frequently. Far-red photon substitution of red photons decreased the amount of extended photosynthetically active radiation (ePAR) photons (400–750 nm) absorbed by leaves because of the lower leaf absorptance of far-red photons. The greater effect on canopy expansion in the second run of far-red photons substitution was able to exceed the reduction of ePAR photon absorption by leaves; therefore, we observed an increased crop gross photosynthetic rate (P g ) between the second and third harvests during the second run. However, during the first run, lower absorptance of ePAR completely offset the effect of the greater canopy size and light interception, and crop P g was decreased in the first run before the first harvest. The changes in light interception and crop P g resulting from far-red photon substitution did not affect dry weight. Far-red photons had photosynthetic activity when applied with a blue and white light mixture, but their efficiency was approximately half that of red photons, potentially because of the lower absorptance of far-red photons. In conclusion, far-red photon substitution of red photons increased canopy size but decreased ePAR photons absorbed by leaves and did not increase the final dry weight. Because far-red light-emitting diodes (LEDs) have higher efficacy for converting electricity into photons, including far-red LEDs in fixtures for sole-source lighting can reduce energy costs without decreasing lettuce yields.
Additional file 5: Table S8. List of differentially expressed genes (DEGs) related to type III secretion system (T3SS) and type VI secretion system (T6SS). Table S9. List of DEGs related to cell motility, division, and exopolysaccharides (EPS). Table S10. List of DEGs related to DNA replication, RNA processes and ribosomal protein biosynthesis. Table S11. List of DEGs related to nucleotide, amino acid and fatty acid metabolism. Table S12. List of DEGs related to coenzyme and carbon metabolism. Table S13. List of DEGs related to signal transduction and transcription.
Cell death is intrinsically linked with immunity. Disruption of an immune-activated MAPK cascade, consisting of MEKK1, MKK1/2, and MPK4, triggers cell death and autoimmunity through the nucleotide-binding leucine-rich repeat (NLR) protein SUMM2 and the MAPK kinase kinase MEKK2. In this study, we identify a Catharanthus roseus receptor-like kinase 1-like (CrRLK1L), named LETUM2/MEDOS1 (LET2/MDS1), and the glycosylphosphatidylinositol (GPI)-anchored protein LLG1 as regulators of mekk1-mkk1/2-mpk4 cell death. LET2/MDS1 functions additively with LET1, another CrRLK1L, and acts genetically downstream of MEKK2 in regulating SUMM2 activation. LET2/MDS1 complexes with LET1 and promotes LET1 phosphorylation, revealing an intertwined regulation between different CrRLK1Ls. LLG1 interacts with the ectodomain of LET1/2 and mediates LET1/2 transport to the plasma membrane, corroborating its function as a co-receptor of LET1/2 in the mekk1-mkk1/2-mpk4 cell death pathway. Thus, our data suggest that a trimeric complex consisting of two CrRLK1Ls LET1, LET2/MDS1, and a GPI-anchored protein LLG1 that regulates the activation of NLR SUMM2 for initiating cell death and autoimmunity.
Most allelopathic studies have focused only on the allelopathy of invasive plants on the growth performance of native plants, while neglecting the allelopathy of native plants on the growth performance of invasive plants, especially species that can co-invade the same ecosystem. This study aimed to evaluate the allelopathy of the native plant Pinus massoniana Lamb. on the seed germination and seedling growth of two invasive Amaranthaceae species, Celosia argentea L. and Amaranthus retroflexus L. using a germination bioassay. Pinus massoniana showed significant allelopathy on the seed germination and seedling growth of the two invasive Amaranthaceae species. The allelopathy of P. massoniana on the seed germination and seedling growth of the two invasive Amaranthaceae species may be attributed to the effects of the generated stress on their germination activity. Pinus massoniana exhibited stronger allelopathy on the seed germination and seedling growth of A. retroflexus than on that of C. argentea. Thus, the invasiveness of A. retroflexus is expected to be lower than that of C. argentea in contact with P. massoniana. The allelopathy of P. massoniana on the seed germination and seedling growth of the two invasive Amaranthaceae species under the co-cultivated conditions was stronger than that under the monocultural conditions. Accordingly, the aqueous extract of P. massoniana can be considered a potential bioherbicide for the control of the two invasive Amaranthaceae species, particularly when both species co-occuring.
Abstract The hormones salicylic acid (SA) and jasmonic acid (JA) often act antagonistically in controlling plant defense pathways in response to hemibiotrophs/biotrophs (hemi/biotroph) and herbivores/necrotrophs, respectively. Threonine deaminase (TD) converts threonine to α-ketobutyrate and ammonia as the committed step in isoleucine (Ile) biosynthesis and contributes to JA responses by producing the Ile needed to make the bioactive JA–Ile conjugate. Tomato (Solanum lycopersicum) plants have two TD genes: TD1 and TD2. A defensive role for TD2 against herbivores has been characterized in relation to JA–Ile production. However, it remains unknown whether TD2 is also involved in host defense against bacterial hemi/biotrophic and necrotrophic pathogens. Here, we show that in response to the bacterial pathogen-associated molecular pattern (PAMP) flagellin flg22 peptide, an activator of SA-based defense responses, TD2 activity is compromised, possibly through carboxy-terminal cleavage. TD2 knockdown (KD) plants showed increased resistance to the hemibiotrophic bacterial pathogen Pseudomonas syringae but were more susceptible to the necrotrophic fungal pathogen Botrytis cinerea, suggesting TD2 plays opposite roles in response to hemibiotrophic and necrotrophic pathogens. This TD2 KD plant differential response to different pathogens is consistent with SA- and JA-regulated defense gene expression. flg22-treated TD2 KD plants showed high expression levels of SA-responsive genes, whereas TD2 KD plants treated with the fungal PAMP chitin showed low expression levels of JA-responsive genes. This study indicates TD2 acts negatively in defense against hemibiotrophs and positively against necrotrophs and provides insight into a new TD2 function in the elaborate crosstalk between SA and JA signaling induced by pathogen infection.
The Solanaceae family includes some important vegetable crops, and they often suffer from salinity stress. Some miRNAs have been identified to regulate gene expression in plant response to salt stress; however, little is known about the involvement of miRNAs in Solanaceae species. To identify salt-responsive miRNAs, high-throughput sequencing was used to sequence libraries constructed from roots of the salt tolerant species, Solanum linnaeanum, treated with and without NaCl. The sequencing identified 98 conserved miRNAs corresponding to 37 families, and some of these miRNAs and their expression were verified by quantitative real-time PCR. Under the salt stress, 11 of the miRNAs were down-regulated, and 3 of the miRNAs were up-regulated. Potential targets of the salt-responsive miRNAs were predicted to be involved in diverse cellular processes in plants. This investigation provides valuable information for functional characterization of miRNAs in S. linnaeanum, and would be useful for developing strategies for the genetic improvement of the Solanaceae crops.
Plants initiate immunity by cell surface pattern-recognition receptors (PRRs) perceiving non-self molecules. PRRs are mostly receptor serine/threonine (Ser/Thr) kinases evolutionarily related to animal interleukin-1 receptor-associated kinase (IRAK)/Pelle-soluble kinases. However, how the activity of these receptor kinases is modulated remains poorly understood. Here, we report that the Arabidopsis PRR CHITIN ELICITOR RECEPTER KINASE 1 (CERK1) undergoes autophosphorylation in unelicited cells at tyrosine428 (Tyr428), which is indispensable for the chitin-induced CERK1 activation. Chitin-activated CERK1 recruits the CERK1-INTERACTING PROTEIN PHOSPHATASE 1 (CIPP1), a predicted Ser/Thr phosphatase, to dephosphorylate Tyr428 and phase out the activity of CERK1. CIPP1 dissociates from Tyr428- dephosphorylated CERK1, allowing CERK1 to return the standby state by retrieving Tyr428 autophosphorylation. Our work sheds multiple mechanistic insights into plant chitin signaling and provides an unprecedented example that a pair of receptor Ser/Thr kinase and Ser/Thr phosphatase, both with unexpected dual specificity, coordinate to dynamically regulate signal transduction through a Tyr phosphorylation cycle.
Plant innate immunity relies on successful detection of microbe-associated molecular patterns (MAMPs) of invading microbes via pattern recognition receptors (PRRs) at the plant cell surface. Here, we report two homologous rice (Oryza sativa) lysin motif–containing proteins, LYP4 and LYP6, as dual functional PRRs sensing bacterial peptidoglycan (PGN) and fungal chitin. Live cell imaging and microsomal fractionation consistently revealed the plasma membrane localization of these proteins in rice cells. Transcription of these two genes could be induced rapidly upon exposure to bacterial pathogens or diverse MAMPs. Both proteins selectively bound PGN and chitin but not lipopolysaccharide (LPS) in vitro. Accordingly, silencing of either LYP specifically impaired PGN- or chitin- but not LPS-induced defense responses in rice, including reactive oxygen species generation, defense gene activation, and callose deposition, leading to compromised resistance against bacterial pathogen Xanthomonas oryzae and fungal pathogen Magnaporthe oryzae. Interestingly, pretreatment with excess PGN dramatically attenuated the alkalinization response of rice cells to chitin but not to flagellin; vice versa, pretreatment with chitin attenuated the response to PGN, suggesting that PGN and chitin engage overlapping perception components in rice. Collectively, our data support the notion that LYP4 and LYP6 are promiscuous PRRs for PGN and chitin in rice innate immunity.
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