Magnetic particle imaging (MPI) is a recently developed, non-invasive in vivo imaging technique to map the spatial distribution of superparamagnetic iron oxide nanoparticles (SPIONs) in animal tissues with high sensitivity and speed. It is a challenge to reconstruct images directly from the received signals of MPI device due to the complex physical behavior of the nanoparticles. System matrix and X-space are two commonly used MPI reconstruction methods, where the former is extremely time-consuming and the latter usually produces blurry images.
It is important to incorporate patient values in healthcare decision-making systems so that the system gives patient-centered decision solutions in the decision-making process. The extant studies show less integration of both. Patient values can be summarized in several medical community review data. The existing knowledge of values is distilled and then combined with existing knowledge of clinical guidelines and rehabilitation. The patient's personalized information is obtained during the consultation process and matched with the general medical data, resulting in personalized recommendations that incorporate the patient's values. An ontology model is constructed based on five domains: population features, medical treatments, personal values, side effects and rehabilitation. Clinical guideline data, rehabilitation data and patient review data are mapped and linked through the ontology to obtain a general medical knowledge graph. The patient's voice, emotion and gesture information during the consultation process are analyzed and recognized as weighted entities, which are passed into the general medical knowledge graph to form a personalized multi-modal knowledge graph of the patient. A prototype system in a man with breast cancer was designed and implemented to demonstrate the method's feasibility.
Abstract Increasing data in allostery are requiring analysis of coupling relationships among different allosteric sites on a single protein. Here, based on our previous efforts on reversed allosteric communication theory, we have developed AlloReverse, a web server for multiscale analysis of multiple allosteric regulations. AlloReverse integrates protein dynamics and machine learning to discover allosteric residues, allosteric sites and regulation pathways. Especially, AlloReverse could reveal hierarchical relationships between different pathways and couplings among allosteric sites, offering a whole map of allostery. The web server shows a good performance in re-emerging known allostery. Moreover, we applied AlloReverse to explore global allostery on CDC42 and SIRT3. AlloReverse predicted novel allosteric sites and allosteric residues in both systems, and the functionality of sites was validated experimentally. It also suggests a possible scheme for combined therapy or bivalent drugs on SIRT3. Taken together, AlloReverse is a novel workflow providing a complete regulation map and is believed to aid target identification, drug design and understanding of biological mechanisms. AlloReverse is freely available to all users at https://mdl.shsmu.edu.cn/AlloReverse/ or http://www.allostery.net/AlloReverse/.
The paper presents an automatic region detection based method to reconstruct street scenes from driving recorder images. The driving recorder in this paper is a dashboard camera that collects images while the motor vehicle is moving. An enormous number of moving vehicles are included in the collected data because the typical recorders are often mounted in the front of moving vehicles and face the forward direction, which can make matching points on vehicles and guardrails unreliable. Believing that utilizing these image data can reduce street scene reconstruction and updating costs because of their low price, wide use, and extensive shooting coverage, we therefore proposed a new method, which is called the Mask automatic detecting method, to improve the structure results from the motion reconstruction. Note that we define vehicle and guardrail regions as “mask” in this paper since the features on them should be masked out to avoid poor matches. After removing the feature points in our new method, the camera poses and sparse 3D points that are reconstructed with the remaining matches. Our contrast experiments with the typical pipeline of structure from motion (SfM) reconstruction methods, such as Photosynth and VisualSFM, demonstrated that the Mask decreased the root-mean-square error (RMSE) of the pairwise matching results, which led to more accurate recovering results from the camera-relative poses. Removing features from the Mask also increased the accuracy of point clouds by nearly 30%–40% and corrected the problems of the typical methods on repeatedly reconstructing several buildings when there was only one target building.
Satellite data and algorithms directly affect the accuracy of phenological estimation; therefore, it is necessary to compare and verify existing phenological models to identify the optimal combination of data and algorithms across the Mongolian Plateau (MP). This study used five phenology fitting algorithms—double logistic (DL) and polynomial fitting (Poly) combined with the dynamic threshold method at thresholds of 35% and 50% (DL-G35, DL-G50, Poly-G35, and Poly-G50) and DL combined with the cumulative curvature extreme value method (DL-CUM)—and two data types—the enhanced vegetation index (EVI) and solar-induced chlorophyll fluorescence (SIF)—to identify the start (SOS), peak (POS), and end (EOS) of the growing season in alpine meadow (ALM), desert steppe (DRS), forest vegetation (FV), meadow grassland (MEG), and typical grassland (TYG) of the MP. The optimal methods for identifying the SOS, POS, and EOS of typical grassland areas were Poly-G50 (NSE = 0.12, Pbias = 0.22%), DL-G35/50 (NSE = −0.01, Pbias = −0.06%), and Poly-G35 (NSE = 0.02, Pbias = 0.08%), respectively, based on SIF data. The best methods for identifying the SOS, POS, and EOS of desert steppe areas were Poly-G35 (NSE = −0.27, Pbias = −1.49%), Poly-G35/50 (NSE = −0.58, Pbias = −1.39%), and Poly-G35 (NSE = 0.29, Pbias = −0.61%), respectively, based on EVI data. The data source explained most of the differences in phenological estimates. The accuracy of polynomial fitting was significantly greater than that of the DL method, while all methods were better at identifying SOS and POS than they were at identifying EOS. Our findings can help to facilitate the establishment of a phenological estimation system suitable for the Mongolian Plateau and improve the observation methods of vegetation phenology.
Fly ash–slag-based alkali-activated materials have excellent mechanical performance and a low carbon footprint, and they have emerged as a promising alternative to Portland cement. Therefore, replacing traditional Portland cement with slag–desulfurization gypsum-based alkali-activated materials will help to make better use of the waste, protect the environment, and improve the materials’ performance. In order to better understand it and thus better use it in engineering, it needs to be characterized for performance and compositional design. This study developed a novel framework for performance characterization and composition design by combining Categorical Gradient Boosting (CatBoost), simplicial homology global optimization (SHGO), and laboratory tests. The CatBoost characterization model was evaluated and discussed based on SHapley Additive exPlanations (SHAPs) and a partial dependence plot (PDP). Through the proposed framework, the optimal composition of the slag–desulfurization gypsum-based alkali-activated materials with the maximum flexural strength and compressive strength at 1, 3, and 7 days is Ca(OH)2: 3.1%, fly ash: 2.6%, DG: 0.53%, alkali: 4.3%, modulus: 1.18, and W/G: 0.49. Compared with the material composition obtained from the traditional experiment, the actual flexural strength and compressive strength at 1, 3, and 7 days increased by 26.67%, 6.45%, 9.64%, 41.89%, 9.77%, and 7.18%, respectively. In addition, the results of the optimal composition obtained by laboratory tests are very close to the predictions of the developed framework, which shows that CatBoost characterizes the performance well based on test data. The developed framework provides a reasonable, scientific, and helpful way to characterize the performance and determine the optimal composition for civil materials.
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