Abstract Giant clams provide and support valuable functions to coral reefs, as well as represent a sustainable resource for traditional fisheries throughout the Indo‐Pacific region. The Ryukyu Archipelago (southern Japan) is known to be the northern latitudinal limits of giant clam distribution, but there is only limited information in the literature regarding species diversity, status, and distribution in this region. In this study, we report findings from a rapid survey in 2016, the first of its kind for the Ryukyu Islands, to determine species distribution and abundance of giant clams (tridacnines) around Okinawa‐jima Island. Results indicate the presence of four species with an overall density of 5.03 per 100 m 2 , from most to least abundant: Tridacna crocea , Tridacna maxima , Tridacna squamosa , and Tridacna noae . The previously reported species Tridacna gigas and Hippopus hippopus were both absent from the surveys. The densities and distributions of tridacnines varied among species and sites, which are likely attributable to efforts in replenishing and protecting stocks of selected species. The most abundant species, T. crocea , is an important fishery species in Okinawa, and has been widely cultured and restocked to augment depleted populations. In comparison, restocking efforts for less popular species, such as T. squamosa , have been limited, and their current sizes and numbers suggest recruitment constraints. Given the importance of the giant clam fishery in this region and the current declines of various species (except T. crocea ), further regulations should focus on the protection of larger and mature clams that function as broodstock necessary to maintain spawning and natural recruitment.
The spawning and larval culture of cowrie (family Cypraeidae) are both difficult and little known, in part due to the long planktonic period of most species. In this study, we describe the captive spawning behaviour and larval development of two tropical cowrie species,
Giant clams (Hippopus and Tridacna species) are thought to play various ecological roles in coral reef ecosystems, but most of these have not previously been quantified. Using data from the literature and our own studies we elucidate the ecological functions of giant clams. We show how their tissues are food for a wide array of predators and scavengers, while their discharges of live zooxanthellae, faeces, and gametes are eaten by opportunistic feeders. The shells of giant clams provide substrate for colonization by epibionts, while commensal and ectoparasitic organisms live within their mantle cavities. Giant clams increase the topographic heterogeneity of the reef, act as reservoirs of zooxanthellae (Symbiodinium spp.), and also potentially counteract eutrophication via water filtering. Finally, dense populations of giant clams produce large quantities of calcium carbonate shell material that are eventually incorporated into the reef framework. Unfortunately, giant clams are under great pressure from overfishing and extirpations are likely to be detrimental to coral reefs. A greater understanding of the numerous contributions giant clams provide will reinforce the case for their conservation.
The boring giant clam Tridacna crocea is an evolutionary, ecologically, economically, and culturally important reef-dwelling bivalve targeted by a profitable ornamental fishery in the Indo-Pacific Ocean. In this study, we developed genomic resources for T. crocea. Using low-pass (=low-coverage, ~6×) short read sequencing, this study, for the first time, estimated the genome size, unique genome content, and nuclear repetitive elements, including the 45S rRNA DNA operon, in T. crocea. Furthermore, we tested if the mitochondrial genome can be assembled from RNA sequencing data. The haploid genome size estimated using a k-mer strategy was 1.31-1.39 Gbp, which is well within the range reported before for other members of the family Cardiidae. Unique genome content estimates using different k-mers indicated that nearly a third and probably at least 50% of the genome of T. crocea was composed of repetitive elements. A large portion of repetitive sequences could not be assigned to known repeat element families. Taking into consideration only annotated repetitive elements, the most common were classified as Satellite DNA which were more common than Class I-LINE and Class I-LTR Ty3-gypsy retrotransposon elements. The nuclear ribosomal operon in T. crocea was partially assembled into two contigs, one encoding the complete ssrDNA and 5.8S rDNA unit and a second comprising a partial lsrDNA. A nearly complete mitochondrial genome (92%) was assembled from RNA-seq. These newly developed genomic resources are highly relevant for improving our understanding of the biology of T. crocea and for the development of conservation plans and the fisheries management of this iconic reef-dwelling invertebrate.
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