Different dietary patterns affect the composition of the gut microbiota. Consistently, microbiome alterations are associated with digestion, immunity, and productivity. <italic>Sasa quelpaertensis</italic> Nakai (SQ) is a perennial bamboo species rich in proteins and fiber. Previous studies have confirmed the health benefits of SQ; however, the effects of SQ supplementation on gut microbiome and production performance are unclear. Herein, Landrace pigs were supplemented with SQ extract (SQE) and changes in the gut microbiome compared to the control group were assessed using 16S rRNA amplicon sequencing. Additionally, the effects of SQE supplementation on average daily gain (ADG) and backfat thickness (BF) were assessed after slaughter. In the SQE group, at the phylum level, Firmicutes and Actinobacteria increased significantly, whereas Bacteroidetes and Spirochaetes significantly decreased (<italic>p </italic>< 0.05). At the genus level, the abundance of <italic>Bifidobacterium</italic> and <italic>Lactobacillus</italic> increased, whereas that of <italic>Treponema</italic>, <italic>Prevotella</italic>, and <italic>Turicibacter</italic> decreased (<italic>p </italic>< 0.05). There was no difference in microbial richness between the groups; however, microbial diversity decreased in the SQE group. Additionally, the SQE group showed a slight increase in ADG, although this difference was not statistically significant. In contrast, BF in the SQE group decreased significantly (<italic>p </italic>< 0.05). These findings highlight the significant influence of SQE supplementation on the gut microbiota and demonstrate the potential of SQ as a valuable feed resource for enhancing animal productivity.
Abstract The purpose of this study was to compare the changes of teat number traits of Jeju native pig (JNP) and Landrace varieties according to the breast cancer metastasis-suppressor 1-like (BRMS1L) genotype. The number of teat varies according to the single-base polymorphism with a G or A base 1,087 from the start codon ATG in the exon 1 region of the BRMS1L gene. The total teat number was examined at birth for 28 JNPs and 72 Landraces, and the BRMS1L genotype was analyzed by Pyrosequencing. As a result, the genotyping frequency of JNP was 1 A / A type, 9 A / G type, and 18 G / G type, whereas, on the contrary, Landrace had 70 A / A type, 2 A / C type, and C / C was identified as 0 heads. The total teat number was between the two varieties was 13.32 ± 0.95 and 14.51 ± 1.03, respectively (P < 0.001). According to genotypes in Jeju native pig breeds, the total number of nipples was 15 A / A, 14.0 ± 0.82 A / G, and 12.89 ± 0.74 G / G (P < 0.018). Conversely, Landrace was 14.54 ± 1.02 A / A and 13.5 ± 0.5 A / G. As a result of the above study, the frequency of varieties and genotypes was found to have a significant effect on the difference in nipple count. Based on the results of this study, if the improvement of Jeju native pigs is to be carried out, it is expected that the number of nipples will increase and the mammalian capacity will increase.
This study examined the association between functional sequence variants (FSVs) of myosin heavy chain 3 (MYH3) genotypes and collagen content in a Landrace and Jeju native pig (JNP) crossbred population. Four muscles (Musculus longissimus dorsi, Musculus semimembranosus, Musculus triceps brachii, and Musculusbiceps femoris) were used for the analysis of meat collagen content, and the same animals were genotyped for the FSVs of the MYH3 gene by using PCR-RFLP (polymerase chain reaction-restriction fragment length polymorphism). Three FSVs of MYH3 genotypes were identified and had genotype frequencies of 0.358, 0.551, and 0.091 for QQ, Qq, and qq, respectively. QQ animals for the FSVs of the MYH3 genotypes showed higher collagen content in their M. longissimus dorsi (p < 0.001), M. semimembranosus (p < 0.001), M. triceps brachii (p < 0.001), and M. biceps femoris (p < 0.001) than qq homozygous animals. After the validation of this result in other independent populations, the FSVs of MYH3 genotypes can be a valuable genetic marker for improving collagen content in porcine muscles and can also be applied to increase the amount of collagen for biomedical purposes.
Fatty acid (FA) composition is one of the most important parameters for the assessment of meat quality in pigs. The FA composition in pork can also affect human health. Our aim was to identify quantitative trait loci (QTLs) and positional candidate genes affecting the FA profile of the longissimus dorsi muscle in a large F2 intercross between Landrace and Korean native pigs comprising 1105 F2 progeny by genome-wide association studies (GWAS) and post-GWAS high-resolution mapping analyses. We performed GWAS using the PorcineSNP60K BeadChip and a linear mixed model. Four genome-wide significant QTL regions in SSC8, SSC12, SSC14, and SSC16 were detected (p < 2.53 × 10−7). Several co-localizations of QTLs in SSC12 for oleic acid, linoleic acid, arachidonic acid, monounsaturated FAs, polyunsaturated FAs, and the polyunsaturated/saturated FA ratio were observed. To refine the QTL region in SSC12, a linkage and linkage disequilibrium analysis was applied and could narrow down the critical region to a 0.749 Mb region. Of the genes in this region, GAS7, MYH2, and MYH3 were identified as strong novel candidate genes based on further conditional association analyses. These findings provide a novel insight into the genetic basis of FA composition in pork and could contribute to the improvement of pork quality.
제주재래흑돼지와 듀록의 교배 $F_2$ 집단에서 경제형질과 isocitrate dehydrogenase 3, beta subunit (IDH3B) 유전자의 유전자형의 연관을 시험하였다. IDH3B 유전자형은 promoter 영역에서 304-bp 삽입/결실 절편의 유무를 기준으로 기초축군과 $F_1$, $F_2$에서 판독하였다. 세 가지 유전자형(AA, AB, BB)이 $F_1$과 $F_2$에서는 모두 발견되었으나, JBP에서는 AA 유전자형이, Duroc에서는 BB 유전자형이 발견되지 않았다. 연관 분석결과에서 도체중(CW), 등지방두께(BFT)와 등심단면적(EMA)의 수준이 유전자형에 따라 유의적인 차이를 보였으나(p<0.05), 각기 다른 성장시기별로 측정된 체중들과 일당증체량을 포함한 성장형질, 유두수를 포함한 번식형질, 등심 내 조지방함량(CFAT)의 수준은 유의적인 차이가 없었다(p>0.05). IDH3B AA 동형접합자인 $F_2$ 돼지들은 다른유전자형을 보유한 개체들에 비해 도체중이 더 무겁고($72.92{\pm}11.133kg$), 등지방두께는 더 두껍고($25.75{\pm}6.06mm$), 등심단면적은 더 넓은 수준($23.82{\pm}4.825cm^2$)을 보였다(p<0.05). 이상은 비육돈 생산 후기에 근내지방의 축적과 상관없이, 등심단면적, 등지방두께, 도체중의 증가가 IDH3B 유전자형과 연관된 생물학적 작용에 의한 결과라 하겠다. 돼지 IDH3B의 304-bp 삽입 대립 유전자는 제주재래흑돼지와 Duroc-관련 분자육종체계에서 돈육 생산성 향상을 위한 분자도움선발의 유전적 마커로 이용될 것으로 기대된다. This study examined the association between genotypes of the isocitrate dehydrogenase 3, beta subunit (IDH3B) gene and economic traits in an $F_2$ population of Duroc and Jeju (South Korea) native black pigs (JBPs). The genotypes was determined the presence/absence of a 304-bp insertion/deletion fragment in the promoter region of the IDH3B gene for JBP, Duroc, and their $F_1$ and $F_2$ progeny. Three genotypes (AA, AB and BB) were found in the $F_1$ and $F_2$ populations, but there was no AA genotype found in JBP and no BB in Duroc. Association analysis results showed the significant differences with carcass weights (CW), backfat thicknesses (BFT) and eye muscle area (EMA) (p<0.05), but not with growth traits including body weights and average daily gains at different stages, reproductive traits including teat numbers, and crude fat contents (CFAT) measured in longissimus dorsi (p>0.05). The $F_2$ pigs possessing the IDH3B BB homozygote had heavier CW ($72.92{\pm}11.133kg$), thicker BFT ($25.75{\pm}6.06mm$), and larger EMA ($23.82{\pm}4.825cm^2$) than those from the other genotypes (p<0.05). These results were estimated that there are biological roles related with IDH3B genotypes resulting development of EMA, BFT, and CW but not with intramuscular fat deposition during late period of pig production. Our findings suggest that the 304-bp insertion allele of porcine IDH3B may be a genetic marker for marker assistant selection for improving meat productivity of the Jeju Black pig and Duroc-related molecular breeding systems.
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