Matej Planý

National Agricultural and Food Centre

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Domenico Pangallo

Slovak Academy of Sciences

KŠ

Katarína Šoltýs

Comenius University Bratislava

Andrea Puškárová

Institute of Molecular Biology of the Slovak Academy of Sciences

Mária Bučková

Institute of Molecular Biology of the Slovak Academy of Sciences

Lucia Kraková

Institute of Molecular Biology of the Slovak Academy of Sciences

Jelena Pavlović

Institute of Molecular Biology of the Slovak Academy of Sciences

T. Kuchta

Food Research Institute

Tomáš Szemes

Comenius University Bratislava

Jaroslav Budiš

Comenius University Bratislava

Zuzana Kisová

Institute of Molecular Biology of the Slovak Academy of Sciences

Cooperative Institutions

Slovak Academy of Sciences

Slovak University of Technology in Bratislava

Institute of Molecular Biology of the Slovak Academy of Sciences

Comenius University Bratislava

Food Research Institute

National Agricultural and Food Centre

International Centre for the Study of the Preservation and Restoration of Cultural Property

Ministero della cultura

South Bohemia research center of aquaculture and biodiversity of hydrocenoses

University of South Bohemia in České Budějovice

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Soil Microbiota of Dystric Cambisol in the High Tatra Mountains (Slovakia) after Windthrow

Sustainability (2019)

Alexandra Šimonovičová Lucia Kraková Elena Piecková Matej Planý Mária Globanová

There has been much more damage to forests in the Slovak Republic in the second half of the 20th century than to other European countries. Forested mountain massifs have become a filter of industrial and transportation emissions from abroad, as well as from domestic origins. There are not only acidic deposits of sulphur and heavy metals present in forest soils, but other additional environmental problems, such as climate change, storms, fires, floods, droughts, are worsening the situation. Therefore, forest terrestrial ecosystems are becoming more vulnerable due to changes in natural and environmental conditions. In the High Tatra Mountains in Slovakia, which are protected as a national park, four internationally monitored localities were established after the windthrow disaster in 2004 and fire in 2005: REF, with intact forest; EXT, with extracted wood mass; NEX, with non-extracted wood mass; and FIR, the burnt locality. Soils from these localities were microbiologically analysed with special attention to fungi. Bacterial microbiota detected by high-throughput sequencing showed the prevalence of the genera Acidothermus, Mycobacterium, and Nocardia, and a very low presence of the genera Acidibacter, Burkholderia-Paraburkholderia, Optitus and the uncultured genus Desulfurellaceae H16 in the soil sample from the burnt locality when compared with the unburned sites. Additionally, soil mycocoenoses showed a low similarity between the locality with an intact forest ecosystem and the localities with extracted (REF–EXT) and non-extracted (REF–NEX) wood mass. There was no similarity with the burnt locality (FIR), where heat-resistant fungi dominated. It was shown that the windthrow disaster and subsequent extraction or non-extraction of wood mass did not affect the soil microbial communities or their development. On the other hand, the influence of fire was significant.

Windthrow

Cambisol

10.3390/su11236851

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Citations (8)

Boron doped diamond electrode – The elimination of psychoactive drugs and resistant bacteria from wastewater

Vacuum (2019)

Tomáš Mackuľak Erika Medvecká Andrea Vojs Staňová Paula Brandeburová Roman Grabic

Oxazepam

Citalopram

10.1016/j.vacuum.2019.108957

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Citations (24)

Biodeteriogens Characterization and Molecular Analyses of Diverse Funeral Accessories from XVII Century

Applied Sciences (2020)

Zuzana Kisová Matej Planý Jelena Pavlović Mária Bučková Andrea Puškárová

A historical crypt offers us a particular view of the conditions of some buried materials (in this case textiles) and the various biogenic phenomena to which they were subjected over the centuries. In addition, significant knowledge can come by studying the DNA of buried objects which allows the recognition of materials, but also to reveal some practice of the funeral ceremony. In this study, the deteriorating microbial communities colonizing various funeral textile items were identified and characterized using microscopic observation, cultivation, polymerase chain reaction (PCR) and sequencing, hydrolytic tests; and culture-independent analysis (high-throughput sequencing, MinION platform). Different PCR assays and consequent sequencing of amplicons were employed to recognize the animal origin of bodice reinforcements and the type of plant used to embellish the young girl. The analysis of ancient DNA (aDNA from animal and plant) was also completed by the application of high-throughput sequencing through Illumina platform. The combination of all these techniques permitted the identification of a complex microbiota composed by dangerous degradative microorganisms able to hydrolyze various organic substrates such as fibroin, keratin, and cellulose. Bacteria responsible for metal corrosion and bio-mineralization, and entomopathogenic and phytopathogenic fungi. The analysis of aDNA identified the animal component used in bodice manufacturing, the plant utilized as ornament and probably the season of this fatal event.

Minion

10.3390/app10165451

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Citations (16)

The microbiome of candle beeswax drops on ancient manuscripts

International Biodeterioration & Biodegradation (2022)

Jelena Pavlović Maria Carla Sclocchi Matej Planý Daniele Ruggiero Andrea Puškárová

Beeswax

Candle

10.1016/j.ibiod.2022.105482

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Citations (7)

Biogas production: evaluation of the influence of K2FeO4 pretreatment of maple leaves (Acer platanoides) on microbial consortia composition

Bioprocess and Biosystems Engineering (2019)

Matej Planý Marianna Czölderová Lucia Kraková Andrea Puškárová Mária Bučková

Biogas

10.1007/s00449-019-02112-x

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Citations (3)

Metagenomic Analysis of Slovak Bryndza Cheese Using Next-Generation 16S rDNA Amplicon Sequencing

Nova Biotechnologica et Chimica (2016)

Matej Planý T. Kuchta Katarína Šoltýs Tomáš Szemes Domenico Pangallo

Abstract Knowledge about diversity and taxonomic structure of the microbial population present in traditional fermented foods plays a key role in starter culture selection, safety improvement and quality enhancement of the end product. Aim of this study was to investigate microbial consortia composition in Slovak bryndza cheese. For this purpose, we used culture-independent approach based on 16S rDNA amplicon sequencing using next generation sequencing platform. Results obtained by the analysis of three commercial (produced on industrial scale in winter season) and one traditional (artisanal, most valued, produced in May) Slovak bryndza cheese sample were compared. A diverse prokaryotic microflora composed mostly of the genera Lactococcus, Streptococcus, Lactobacillus, and Enterococcus was identified. Lactococcus lactis subsp. lactis and Lactococcus lactis subsp. cremoris were the dominant taxons in all tested samples. Second most abundant species, detected in all bryndza cheeses, were Lactococcus fujiensis and Lactococcus taiwanensis, independently by two different approaches, using different reference 16S rRNA genes databases (Greengenes and NCBI respectively). They have been detected in bryndza cheese samples in substantial amount for the first time. The narrowest microbial diversity was observed in a sample made with a starter culture from pasteurised milk. Metagenomic analysis by high-throughput sequencing using 16S rRNA genes seems to be a powerful tool for studying the structure of the microbial population in cheeses.

Lactococcus

Starter

Amplicon sequencing

10.1515/nbec-2016-0003

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Citations (17)

Colored stains: Microbial survey of cellulose-based and lignin rich papers

International Journal of Biological Macromolecules (2023)

Jelena Pavlović Andrea Puškárová Matej Planý Zuzana Farkas Magdaléna Rusková

10.1016/j.ijbiomac.2023.124456

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Citations (10)