Abstract A key challenge in neuroscience is understanding how neurons in hundreds of interconnected brain regions integrate sensory inputs with prior expectations to initiate movements. It has proven difficult to meet this challenge when different laboratories apply different analyses to different recordings in different regions during different behaviours. Here, we report a comprehensive set of recordings from 115 mice in 11 labs performing a decision-making task with sensory, motor, and cognitive components, obtained with 547 Neuropixels probe insertions covering 267 brain areas in the left forebrain and midbrain and the right hindbrain and cerebellum. We provide an initial appraisal of this brain-wide map, assessing how neural activity encodes key task variables. Representations of visual stimuli appeared transiently in classical visual areas after stimulus onset and then spread to ramp-like activity in a collection of mid- and hindbrain regions that also encoded choices. Neural responses correlated with motor action almost everywhere in the brain. Responses to reward delivery and consumption versus reward omission were also widespread. Representations of objective prior expectations were weaker, found in sparse sets of neurons from restricted regions. This publicly available dataset represents an unprecedented resource for understanding how computations distributed across and within brain areas drive behaviour.
To analyze and interpret the chemical record, the 2007 Phoenix Mars Lander includes four wet chemistry cells. These Wet Chemistry Laboratories (WCLs), part of the Microscopy, Electrochemistry, and Conductivity Analyzer (MECA) package, each consist of a lower “beaker” containing sensors designed to analyze the chemical properties of the regolith and an upper “actuator assembly” for adding soil, water, reagents, and stirring. The beaker contains an array of sensors and electrodes that include six membrane‐based ion selective electrodes (ISE) to measure Ca 2+ , Mg 2+ , K + , Na + , NO 3 − /ClO 4 − , and NH 4 + ; two ISEs for H + (pH); a Ba 2+ ISE for titrimetric determination of SO 4 2− ; two Li + ISEs as reference electrodes; three solid crystal pellet ISEs for Cl − , Br − , and I − ; an iridium oxide electrode for pH; a carbon ring electrode for conductivity; a Pt electrode for oxidation reduction potential (Eh); a Pt and two Ag electrodes for determination of Cl − , Br − , and I − using chronopotentiometry (CP); a Au electrode for identifying redox couples using cyclic voltammetry (CV); and a Au microelectrode array that could be used for either CV or to indicate the presence of several heavy metals, including Cu 2+ , Cd 2+ , Pb 2+ , Fe 2/3+ , and Hg 2+ using anodic stripping voltammetry (ASV). The WCL sensors and analytical procedures have been calibrated and characterized using standard solutions, geological Earth samples, Mars simulants, and cuttings from a Martian meteorite. Sensor characteristics such as limits of detection, interferences, and implications of the Martian environment are also being studied. A sensor response library is being developed to aid in the interpretation of the data.
Abstract Dorsal horn excitatory interneurons that express gastrin-releasing peptide (GRP) are part of the circuit for pruritogen-evoked itch. They have been extensively studied in a transgenic line in which enhanced green fluorescent protein (eGFP) is expressed under control of the Grp gene. The GRP-eGFP cells are separate from several other neurochemically-defined excitatory interneuron populations, and correspond to a class previously defined as transient central cells. However, mRNA for GRP is widely distributed among excitatory interneurons in superficial dorsal horn. Here we show that although Grp mRNA is present in several transcriptomically-defined populations, eGFP is restricted to a discrete subset of cells in the GRP::eGFP mouse, some of which express the neuromedin receptor 2 and likely belong to a cluster defined as Glut8. We show that these cells receive much of their excitatory synaptic input from MrgA3/MrgD-expressing nociceptive/pruritoceptive afferents and C-low threshold mechanoreceptors. Although the cells were not innervated by pruritoceptors expressing brain natriuretic peptide (BNP) most of them contained mRNA for NPR1, the receptor for BNP. In contrast, these cells received only ~ 10% of their excitatory input from other interneurons. These findings demonstrate that the GRP-eGFP cells constitute a discrete population of excitatory interneurons with a characteristic pattern of synaptic input.
Targeting deep brain structures during electrophysiology and injections requires intensive training and expertise. Even with experience, researchers often can’t be certain that a probe is placed precisely in a target location and this complexity scales with the number of simultaneous probes used in an experiment. Here, we present Pinpoint , open-source software that allows for interactive exploration of stereotaxic insertion plans. Once an insertion plan is created, Pinpoint allows users to save these online and share them with collaborators. 3D modeling tools allow users to explore their insertions alongside rig and implant hardware and ensure plans are physically possible. Probes in Pinpoint can be linked to electronic micro-manipulators allowing real-time visualization of current brain region targets alongside neural data. In addition, Pinpoint can control manipulators to automate and parallelize the insertion process. Compared to previously available software, Pinpoint’s easy access through web browsers, extensive features, and real-time experiment integration enable more efficient and reproducible recordings.
The Dp(10)2Yey mouse carries a ∼2.3-Mb intra-chromosomal duplication of mouse chromosome 10 (Mmu10) that has homology to human chromosome 21, making it an essential model for aspects of Down syndrome (DS, trisomy 21). In this study, we investigated neuronal dysfunction in the Dp(10)2Yey mouse and report spatial memory impairment and anxiety-like behavior alongside altered neural activity in the medial prefrontal cortex (mPFC) and hippocampus (HPC). Specifically, Dp(10)2Yey mice showed impaired spatial alternation associated with increased sharp-wave ripple activity in mPFC during a period of memory consolidation, and reduced mobility in a novel environment accompanied by reduced theta-gamma phase-amplitude coupling in HPC. Finally, we found alterations in the number of interneuron subtypes in mPFC and HPC that may contribute to the observed phenotypes and highlight potential approaches to ameliorate the effects of human trisomy 21.
The Dp(10)2Yey mouse carries a ~2.3 Mb intra-chromosomal duplication of mouse chromosome 10 (Mmu10) that has homology to human chromosome 21, making it an essential model for aspects of Down syndrome (DS, trisomy 21). In this study, we investigated neuronal dysfunction in the Dp(10)2Yey mouse and report spatial memory impairment and anxiety-like behaviour alongside altered neural activity in the medial prefrontal cortex (mPFC) and hippocampus (HPC). Specifically, Dp(10)2Yeymice showed impaired spatial alternation associated with increased sharp-wave ripple activity in mPFC during a period of memory consolidation, and reduced mobility in a novel environment accompanied by reduced theta-gamma phase-amplitude coupling in HPC. Finally, we found alterations in the number of interneuron subtypes in mPFC and HPC that may contribute to the observed phenotypes and highlight potential approaches to ameliorate the effects of human trisomy 21.Funding Information: This research was funded in whole, or in part, by the Wellcome Trust.Declaration of Interests: The authors declare no competing interests.Ethics Approval Statement: All experiments were carried out under License from the UK Home Office and with Local Ethical Review Board (AWERB) approval.
Targeting deep brain structures during electrophysiology and injections requires intensive training and expertise. Even with experience, researchers often can't be certain that a probe is placed precisely in a target location and this complexity scales with the number of simultaneous probes used in an experiment. Here, we present Pinpoint, open-source software that allows for interactive exploration of stereotaxic insertion plans. Once an insertion plan is created, Pinpoint allows users to save these online and share them with collaborators. 3D modeling tools allow users to explore their insertions alongside rig and implant hardware and ensure plans are physically possible. Probes in Pinpoint can be linked to electronic micro-manipulators allowing real-time visualization of current brain region targets alongside neural data. In addition, Pinpoint can control manipulators to automate and parallelize the insertion process. Compared to previously available software, Pinpoint's easy access through web browsers, extensive features, and real-time experiment integration enable more efficient and reproducible recordings.
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